srp19 (srp19,LOC107704595)


Basic Information

Item Value
gene id srp19
gene name srp19,LOC107704595
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 783648 ~ 786422 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247783.1
CCTGCCCCCCGCCGGAAGTGACGTGTTCACAGAACCCCTCATCAGCGTTTCGCTTCCAAGCTTTCAGAATCATACGCGTTCGTTTTAAACGTGAATTAAACTCTTAGACGCGGAAGAAATGGCGCATCTAACGACGAACCCGGCGGATAAAGAGCGGTTTCTGTGCATCTATCCGTCATACATCAACAGTAAAAAGACGAAAGCAGAAGGCAGAAGAATATCTGCAGAGAAGgcTGTGGAGAACCCGTCGTGTGCTGAGATCCGGGACGTTCTCTCGGCTGCGGGACTCAATGTTCTGGTGGAGAACAAGATGTATCCGCGCGAATGGAACCGAGACGTTCAGTTCAGAGGAAGAGTGAGGATCCAGCTGAAGCTCGAGGACGGAAACTTGTGCCAAGAGAAGTTTGCATCTAGGAAGGATGTGATGTTTTACGTGGCGGAGATGATCCCGAAACTGAAGAGCAGAACGCAGAAGAGCGGCGGAGCCGAGGCCGGATCACAGACGGGAGAAGGAGGCAAGAaagggaagaagaagaagaagtagatGACCTGATCCTCaagcagctctttttttttattattattatttcatcttTTTGCTTGGCGTCTGTGTGTTTTGATCATGAACTCTGGCTCTCGGTGACGCTCGTTTGTTAATTACCGATGATGGAGTGTGTTTAAAGGGAGGCCCGCGTCCTTCATCGCACCTGTGTTCGGGAGAGAGAGCGTGTGAAATAACTGAAGTGTCTCGCTGGGGTCCGTGTGTTAGTTCAGGGCCGGATTGGCCCCGCGACTGTCGCCAAAATTCTTCAGATGTTTGGTCCGGAGCTCGAGTCTGGTGAGCCACTCGTCACGCAGCCTGAAACCACAGCCACAGAGACTTCATTACTTCATTACTTGATCGCTGCATGCTCCGTTCAGCccagacacaaacacagcattGATTTAAGGAGAGCTGCAAAACTAGTCAACcaatacattcaaaataaaactctctgtttacattc

Function

symbol description
srp19 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP19 (signal recognition particle 19).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0048500 signal recognition particle cellular_component
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03105 SRP19; signal recognition particle subunit SRP19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247783.1 True 1007 mRNA 0.49 5 783648 786422

Neighbor

gene id symbol gene type direction distance location
lrrc2 lrrc2,LOC107697579 coding downstream 13128 760218 ~ 770520 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding downstream 36312 743193 ~ 747336 (-)
rnf165b rnf165b,rnf165,LOC107726876,LOC107569673,LOC107712483,LOC107704592 coding downstream 58678 713366 ~ 724970 (-)
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding downstream 152503 630354 ~ 631145 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding downstream 172734 607450 ~ 610914 (-)
nudt12 nudt12 coding upstream 16601 803023 ~ 809151 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding upstream 98770 885192 ~ 914375 (-)
snx2 snx2,LOC107566389,LOC107713555,LOC107704573 coding upstream 161477 947899 ~ 961374 (-)
LOC122350969 sncaip,LOC107577394 coding upstream 179747 966169 ~ 980033 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding upstream 195212 981634 ~ 988560 (-)
G60061 NA non-coding downstream 27005 755624 ~ 756643 (-)
G60003 NA non-coding downstream 58648 723190 ~ 725000 (-)
G60036 NA non-coding downstream 122550 660435 ~ 661098 (-)
G60016 NA non-coding downstream 166176 615281 ~ 617472 (-)
G59750 NA non-coding downstream 235737 545919 ~ 547911 (-)
G60079 NA non-coding upstream 30039 816461 ~ 820768 (-)
G60085 NA non-coding upstream 46305 832727 ~ 835131 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding upstream 58997 845419 ~ 852159 (-)
G60112 NA non-coding upstream 89537 875959 ~ 876869 (-)
LOC122351117 NA non-coding upstream 138026 924448 ~ 946339 (-)
csgalnact1b LOC107712620 other downstream 44276 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 51804 723145 ~ 731844 (-)
ccl27a NA other downstream 212675 565886 ~ 570973 (-)
G60098 NA other upstream 348979 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 354276 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 562749 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 775124 1561546 ~ 1606609 (-)
G60220 NA other upstream 790383 1576805 ~ 1580616 (-)

Expression


Co-expression Network