ap3s1 (ap3s1,LOC107661175,LOC107566394,LOC107729057)


Basic Information

Item Value
gene id ap3s1
gene name ap3s1,LOC107661175,LOC107566394,LOC107729057
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1160400 ~ 1168457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247785.1
TGCTGAGCTCGTTGACAGTTTCCGGCGCGCTCTTCCGCTCTGCTGTGCGCGTGAGTGTCAGATTGCGATTATTAGTTATTGATTATTGTAATAACAGTCTCTGACATCGACGAACTCAGCCGTAGCTGGATCCGACCACAGCGAAGGTGAACATGATAAAAGCCATTCTGATATTTAATAATCATGGCAAACCACGGCTATCAAAATTCTACGAGCATTacACCGAAgacacagagcagcagatcatCAGAGAAACCTTCCACCTGGTGTCCAAACGAGACGAGAACGTGTGCAACTTCCTGGAGGGAGGActGTTAATCGGCGGCTCAGATAACAAGCTGATCTACAGACACTACGCTACGCTGTACTTCGTGTTCTGCGTGGATTCGTCCGAGAGCGAGCTGGGCATTCTGGATCTGATCCAGGTGTTCGTGGAGACGCTGGATAAATGCTTCGAGAACGTCTGTGAGCTGGACCTGATCTTCCACATGGATAAGGTGCACAACATCCTAGCGGAGATGGTGATGGGCGGCATGGTGCTGGAGACCAACATGAGCGAGATCATCACGCAGGTGGAGGCACAGGGCAAGATGGAGAAGTCTGAGgCTGGGATCGCGGGGGCTCCGGCTCGTGCCGTGTCGGCCGTCAAGAACATGAACTTGCCAGAGATGCCCAAGAACATCAACATCGGGGACATCAGCATCAAAGTGCCAAACCTGCCGTCTTTTAAATAGTGACCGCTGCACAGAACTGTGAGACTGTGTTTACCTGAGTCCAGCTGATCTTGAGTTGCATCACAGACGAAGAAGGCACTGTGTGATGCTGTCTAtgaagtatttatttgattcttctgtcctctctcactctctctctctctctgtgtgtgtttaaatgtgtgtgtgtgtttcggtttgagtgtgtttgtgtgtgtgtgagagtgtttaaatgcgtgtgagtgtg
>XM_043247787.1
TGCTGAGCTCGTTGACAGTTTCCGGCGCGCTCTTCCGCTCTGCTGTGCGCGTGAGTGTCAGATTGCGATTATTAGTTATTGATTATTGTAATAACAGTCTCTGACATCGACGAACTCAGCCGTAGCTGGATCCGACCACAGCGAAGGTGAACATGATAAAAGCCATTCTGATATTTAATAATCATGGCAAACCACGGCTATCAAAATTCTACGAGCATTacACCGAAgacacagagcagcagatcatCAGAGAAACCTTCCACCTGGTGTCCAAACGAGACGAGAACGTGTGCAACTTCCTGGAGGGAGGActGTTAATCGGCGGCTCAGATAACAAGCTGATCTACAGACACTACGCTACGCTGTACTTCGTGTTCTGCGTGGATTCGTCCGAGAGCGAGCTGGGCATTCTGGATCTGATCCAGGTGTTCGTGGAGACGCTGGATAAATGCTTCGAGAACGTCTGTGAGCTGGACCTGATCTTCCACATGGATAAGGTGCACAACATCCTAGCGGAGATGGTGATGGGCGGCATGGTGCTGGAGACCAACATGAGCGAGATCATCACGCAGGTGGAGGCACAGGGCAAGATGGAGAAGTCTGAGACCTTTATCTTTCAGTGTCCCAGACAGGACAGGTAGACACAGgCTGGGATCGCGGGGGCTCCGGCTCGTGCCGTGTCGGCCGTCAAGAACATGAACTTGCCAGAGATGCCCAAGAACATCAACATCGGGGACATCAGCATCAAAGTGCCAAACCTGCCGTCTTTTAAATAGTGACCGC

Function

symbol description
ap3s1 Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be part of membrane coat. Orthologous to human AP3S1 (adaptor related protein complex 3 subunit sigma 1).

NR:

description
PREDICTED: AP-3 complex subunit sigma-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12399 AP3S; AP-3 complex subunit sigma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247785.1 True 960 mRNA 0.50 6 1160400 1168457
XM_043247787.1 False 783 mRNA 0.51 7 1160619 1168457

Neighbor

gene id symbol gene type direction distance location
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 102473 1016890 ~ 1057927 (-)
prr16 LOC107713553 coding downstream 155987 998648 ~ 1004413 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding downstream 171840 981634 ~ 988560 (-)
LOC122350969 sncaip,LOC107577394 coding downstream 180367 966169 ~ 980033 (-)
snx2 snx2,LOC107566389,LOC107713555,LOC107704573 coding downstream 199026 947899 ~ 961374 (-)
LOC122350094 NA coding upstream 76377 1244834 ~ 1248364 (-)
pym1 LOC107701384 coding upstream 81603 1250060 ~ 1252516 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding upstream 278543 1447000 ~ 1454530 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 326048 1494505 ~ 1523464 (-)
LOC122350659 NA coding upstream 459196 1627653 ~ 1646362 (-)
G60153 NA non-coding downstream 38167 1120928 ~ 1122233 (-)
G60133 NA non-coding downstream 95200 1064397 ~ 1065200 (-)
G60131 NA non-coding downstream 98162 1061093 ~ 1062238 (-)
G60118 hsd17b4 non-coding downstream 148582 1011367 ~ 1011818 (-)
LOC122351117 NA non-coding downstream 214061 924448 ~ 946339 (-)
G60154 NA non-coding upstream 15851 1184308 ~ 1184649 (-)
G60170 NA non-coding upstream 45850 1214307 ~ 1218802 (-)
G60169 trim36,LOC107749435,LOC107573790 non-coding upstream 63619 1232076 ~ 1266809 (-)
G60166 LOC107701385,LOC107573793,LOC107749411,LOC107572966,LOC107728257,LOC107661167 non-coding upstream 96142 1264599 ~ 1266232 (-)
G60187 NA non-coding upstream 100341 1268798 ~ 1269384 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 1114 1140698 ~ 1159286 (-)
G60098 NA other downstream 22248 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 421028 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 428556 723145 ~ 731844 (-)
ccl27a NA other downstream 589427 565886 ~ 570973 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 180714 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 393089 1561546 ~ 1606609 (-)
G60220 NA other upstream 408348 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 564407 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 580605 1749062 ~ 1762549 (-)

Expression


Co-expression Network