plod1a (plod1a,plod1,LOC107698842,LOC107678430,LOC107748983)


Basic Information

Item Value
gene id plod1a
gene name plod1a,plod1,LOC107698842,LOC107678430,LOC107748983
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22956869 ~ 22968973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247808.1
TGGCGGAGAAGGGGTGGAGAAAGGCAGAAGTGGGCAGGCTTGTGTTTGTTCGGGAACGTTCAACTAAACTTTCTCTCGAGGAAAGGCCTTACTTCATCTCTCTCCGTTTTGCCGTGGAGTTCTGGAGGAGGATAACGGGTCAGAAAATGAAAGGAGTCCTGGCGGTTCTCGCGTGTTTGTTTGGGTCCTTTTCTCCGCTCGGCTGTAATCAGCAGGGCTCGATCCCCGAGGGAGATCTTCTAGTGCTGACCGTGGCCACGCAGGAGACCGACGGCTTCACGCGCTTCTTGAGATCCGCGAAACGGTTCAATTACTCCGTCGAGGTTCTGGGACGGGGTGAAACATGGAAAGGTGGAGATTACATGTCTTCTCCGGGTGGAGGGCAGAAGGTGCGCCTGCTGAAGTCTGCTCTGGAGGACATACAGGAGGAGAACAAAGTCATTCTTTTTGTGGATAGCTACGACGTGATCTTTTCCTCTGGGCCGAAAGAGCTGCTGAAGAAGTTTCAGCAGGCCAAACACAGAGTTGTGTTTTCTACCGAGACGCTCATCTGGCCAGACCGTCACCTGGAAGACAAGTATCCTCATGTCAGGGAAGGGAAGAGATTCCTTGGGGCAGGAGGCTTCATTGGCTACGCACCTAACCTTAAGAAGATGCTTTCGGACTGGTCGGGAGCAGACAGTGACAGCGACCAACTCTATTTCACCAAGACCTACATCAACCCGGAGAAAAGAAAGTCTATAAATATAACTCTAGACAACAAGTGCAGATTGTTCCAGAATCTACACGGAGCTCTTGATGAGGTCGTGCTGAAGTTTGAAGATGGACGTGTGCGAGCCAGAAATGTGCTTTACGACACGCTGCCTGTTATTATCCATGGAAACGGACCCACCAAACTTCAGATAAACTACCTGGGGAACTATATCCCAAATGTGTGGACATTCGAGTCCGGCTGCACAGTTTGTAACGAGACTCTGCGACCGCTTTCTGGACTCCAGgAGAGTGAATATCCTGTGGTTGTCATCGGGATCTTCATCCAGCAGCCCACACCCTTTGTCACTGTGTTTTTTGAGCGCTTACTTAACCTCAAATACCCCAAAAACCGGCTACAATTATTCATCTATAATCAGGAATCACACCACGAAGCCCACGTACGCACCTTTCTAGAGCATCACGAGCCTGAATACCAGGGAGTGAAGCTGATTGGTCCGGAGGAGGATATAGACGCCGTGACCTCGCGTAATATAGGCTTCGATATGTGTCGAGACAACATTGACTGCGAATACTTCTTCAGCATAGACGTGGATGTGGTTTTAAAGAATGAAGACACGCTTAAAATACTTATCGAGCTCAATAAGCCTTTTATTGCACCGATGATGACCAAACCTGGGCGTCTGTGGACGAACTTCTGGGGCGCTCTCAGCGCAGACGGCTACTACGCCAGATCAGAGGATTACGTGGACATAGTTCAAAGACAGCGCAAGGGTTTGTGGAACGTCCCATACGTCTCTCACATATTCCTGCTGAAAGCCGATGCATTGAGGACTGACCTCAAAGATCCTGACCTGTTCGAATCTGCAACGCTGGATCCAGATATGGCCTTCTGCTCCAAAGTTCGAAACAAGGGTGTCTTCATGTTCGTAACAAATATGCACGCTTACGGTCGGGTTTTATCGACTGAAAATTACCAGACAAACCACTTGCACAATGATCTCTGGCAGATCTTCGAAAATCCCACGGAATGGGAAGAAAGATACATTCATAAGAATTATTCCAAAGTtttgaaagctgaatttatAGAAACGCCGTGTCCTGATGTCTACTGGTTCCCCGTGTTCACGGACGTGGCCTGCGAACATATGATCGAGGAGATGGAGCATTTTGGCCAGTGGTCAGGAGGTGGAAATGTGgACAATAGGATCCAAGGTGGATATGAAAATGTGCCAACGATTGATATCCACATGAATCAGGTGGGCTACGAAAAAGAATGGCACAAGTTCCTTTTGGACTACGTAGCACCGGTCACTGAGAAGATGTACCCAGGATACTACACAAGGgCTCAGTTTGATCTGGCGTTTGTAGTCCGATATAAACCTGATGAACAGCCCTCACTCAGACCACATCACGACGCCTCTACTTTCACTATCAATATAGCACTCAATCAAGTGGGGATCGACTATCAGGGCGGCGGATGCCGGTTCTTGAGGTATAACTGCTCTGTTACGGCTCCGCGGAGGGGCTGGGCGCTCATGCACCCCGGACGCCTCACTCACTACCACGAGGGTCTGCCCACCACAGAGGGGGTCCGATACATCGTTGTCTCTTTTGTGGACCCTTGAACTACTTCCTTTCGGAAACGTTTGAATTCAGAAGACTCTAGAATAATCAAATCATGCCGACACCGTGCCTCACGTTGTGAATAcgtcagtgtatatatatatcttccatgtgttttttaatgcaagGGCATCGTTTGATAACGATCGATGAACGTCGAAAGCAGTTCGACGGATCACTGCGCAGTGTGTGACTCCTATGCAGCGacattttactcatttatttattgtcatgtATCGAAGAGATTGCTCCTTA

Function

symbol description
plod1a Predicted to enable procollagen-lysine 5-dioxygenase activity. Acts upstream of or within fin morphogenesis. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of collagen trimer. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including cranium; notochord; otic vesicle; pectoral fin; and shield. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1. Orthologous to human PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1).
plod1 Enables procollagen-lysine 5-dioxygenase activity. Involved in epidermis development; peptidyl-lysine hydroxylation; and response to hypoxia. Located in extracellular exosome. Implicated in Ehlers-Danlos syndrome kyphoscoliotic type 1.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0033334 fin morphogenesis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005506 iron ion binding molecular_function
GO:0008475 procollagen-lysine 5-dioxygenase activity molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K00473 PLOD1; procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247808.1 True 2592 mRNA 0.49 19 22956869 22968973

Neighbor

gene id symbol gene type direction distance location
LOC122350040 NA coding upstream 10715 22944210 ~ 22946154 (+)
fam110a LOC107755603,LOC107703992,LOC107678459,LOC107570008,LOC107553114,LOC107752568 coding upstream 242754 22710095 ~ 22714115 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding upstream 247311 22673889 ~ 22709558 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding upstream 283587 22661149 ~ 22673282 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding upstream 297622 22647848 ~ 22659247 (+)
nppal zgc:195023,LOC107595800,LOC107748995 coding downstream 453699 23422672 ~ 23423662 (+)
nppb LOC107687134,LOC107748982,LOC107595789 coding downstream 456935 23425908 ~ 23427204 (+)
nppa nppa,LOC107691053,LOC107602452,LOC107595801,LOC107687143 coding downstream 459942 23428915 ~ 23430926 (+)
mthfr mthfr,LOC107602465,LOC107691055,LOC107687111 coding downstream 478218 23447191 ~ 23456783 (+)
plch2a LOC107687112,LOC107595766,LOC107691057,LOC107748961,LOC107602463 coding downstream 513922 23482895 ~ 23583377 (+)
LOC122350789 NA non-coding upstream 45487 22909647 ~ 22911382 (+)
G66261 NA non-coding upstream 156715 22799639 ~ 22800154 (+)
G66189 NA non-coding upstream 425119 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 443624 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 668022 22288308 ~ 22288847 (+)
LOC122350915 NA non-coding downstream 261070 23230043 ~ 23231024 (+)
LOC122350913 NA non-coding downstream 262591 23231564 ~ 23239812 (+)
G66344 NA non-coding downstream 269004 23237977 ~ 23238253 (+)
G66350 NA non-coding downstream 463836 23432809 ~ 23433745 (+)
G66351 NA non-coding downstream 465145 23434118 ~ 23435033 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other upstream 31101 22899436 ~ 22925768 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other upstream 229425 22724582 ~ 22727444 (+)
mfsd2al2 NA other upstream 232961 22715379 ~ 22723908 (+)
LOC122350000 ddx51 other upstream 416636 22532468 ~ 22540233 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 836073 22119913 ~ 22120796 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 5022 22973995 ~ 22987162 (+)
prdm16 prdm16,si:ch211-263k4.2 other downstream 85643 23054616 ~ 23401562 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other downstream 434740 23403713 ~ 23410561 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other downstream 663377 23632350 ~ 23634065 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 783595 23752568 ~ 23804049 (+)

Expression


Co-expression Network