zgc:194990 (zgc:194990,LOC107699042,LOC107557196,LOC107758027)


Basic Information

Item Value
gene id zgc:194990
gene name zgc:194990,LOC107699042,LOC107557196,LOC107758027
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6576325 ~ 6587081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247854.1
CAACGGAAATATACGAAGAGTCGTTCGGGAATCTTACGGAAACACACGATCGTTAATCACTCCGCGACAAAAGGCTAATAACTAAAGTACCAAGACGTGTGAAAGCTGATTGGTCACCGCGAGATCCGGCGCACTCCTGCCGCGACTGCTGAGGCGAGGCCATTCAGAGAACCAGCGGCGAGATGCGCGAACGCCACGCGAGGCTGTGATGTAGAAAAACTTTCTGAGGATATTTTTCAAAAGGTTTAACGGAAAGATTTTCTAATAGGCTGTCCAATATGATGAAAGATTGCCTTCAGTTCCTCATTGAGCCGGCCAAGAAGCTCAAGTTTCGTCTGAAGGAGACGCGGAAGAGAGTAAAACATGTGAAGAAAGAGCCGTTAACAGAGAGTCAGCTGTTTATAATGGAGCTCGCGCGAGAACTCAACAGAATCTGTCAGAGGTCAGATATTCTGGCTCACATCTGGACCGGAGAGGATGTATGGCCTCCTCGTGCCTGTCAAGAGTTCATTGTGGAGACCGCCAACATCCTGGAGATGAAGGAAAATACTGAGACGCCCGTGCAAGTTTATGCTGATCTGCATCCAGAAAAGAGGGACTGGAAGAGTCAGTTGCTGAGCATGCTGGAGCAGGGAGGAGAATATGACATGGGCCCGTACAAAAGGATCATTATGGACTGGACCAGAGGACAGCGCAACAGACACCCGCACGGTATCTGGCCGGGGGAGGCGGTGCTGATGACGCTGGACGACGTGGAGCTGCAGTGGAAGCGGGGTCATCTGTCACATCTGCGGTCGGCCGTGGAGCTGCTCATAGGGGTCGTGTTTGGGGAACATCTGGATAAGgagcTCATTCCAAGGCTGTGGCtggtacaaaaacaaaagacccAGAAGATCGACTCCACAGGCTACATTCCACACATAGtgtgGAACTGGATATGTGACGCTGCAGTGGAGGTGACCCTTGACCCAGAGACGGCCAACCCTGCTCTGCTTCTGTCTGGGGACTGCAAGCGCATGCAGTGCGGTCTGGAGCGGCGCGAGGTCCCCCCCAGCCTGCGGCGCTTCGACGGCTGGTGGTGCTGTCTCGGCTCTGAAGGCTTCTCGTCGGGACGCCGGTACTGGGAGGTAGAAGTGGGCGACCGTGACTGGCGTCTCGGGGTGGCCAAAGAATCAGCTCTCTGCAAAGGCTACAGACCGCTGAACGCCCAGAGCGGATACCTGACCCTCCGGCTGGAGCGGGGCTCCGAGCTCAAAGCCCTGACCACTCCGCCCACGCCCTTGCCCCAGTCACTCATCCCGCGGAGGGTGGGGGTCTATCTGGACTACGAGGAGGGGCAGCTGTCTTTCTATGACACCCAGAAGCGTGCGCACATCTACACATACAGCGAGAGGTTCACAGAGAAGCTTTACCCAGTGTTTGGGACGGTGGAGATGGTGCGGGAGATGGTGATCAGGCCTGCAGACCTCAGGGAGCCGTGTCTCTGTAAGGGACAATGTCTGTTCTGCTTGTAATGAACGCGCAACGGATGCggaaaaattacacacaccATGAAACAACAGCACTTGATCGATGCTTACAAAAACTAGAAGCATAGtgaaaatttgacattttttagaGTAGCTAAAGCTGTGAAATCTGCATCATTGAGGAAATGTTCAAATACTGTTGTTAACCGATCTGATTGGTCAAATGCCCATGTCTTGTCACAGAGAGCAGCACTGATGATGTATTTTTCTAGGCCTGTCTGGAAGTTTGCACGACCCTGATTCCCTCAGCAAAAACACAATGGGATTTTTTTCTTCGGCTTGTTCAAAGCTTGTGgattattacagaaaataatatcaGTTACCTAAAATTCTCAACTAAATGGTAATATACTGACTGAGCTTGTGTTAACCACAGACCCTATTTCAGGTATTTAACCAAAAACCTTTTCAAAAGACCAGTTGAACGCTGGACTGAAAGTGTTACAGTGTTAAAAACTCATTTCTCATTCTGGCGTACAAAAATACATCATCCCTGCCGAGCACTACCGGTCGAACTAATAAGTGTGTTTAACTTCAGGCAGCACTGCAGAGAACTGACTCAAAGAACACTAAATTGCTTTTATAAccattcaaaaatatcttaagtattatattttgatgtgtttatcaataaaactgattataaaAGACGGAATTGTattggtattttaaaaaaaaaccttatagATGGTTTACACAGGcactgtattattaaattactaagcaattaaaactaaataaactcaaatctaaaacatttaaaaaaaaataattttgaagaCAAAAGTTACTAAAACTTTGTtaaaattttatgaaaacataTATACGTAGTGGTAATAAAACACTGGCGAGTTGAAGTTGAACACACCTATTGTTGCTGTATGAGACTGGTTAGCATGcagttttcactttttcagGAAATCAACCCGTGTTATATTTGTGCTTATTAATCTGGGATAGGAATACATTCTTGTGCAGCTACTAAaacatattctttaaaaaaaaaacttttaaggaCTTCTTGCTTAAACATACTGATGCACGAGTGCTGGGAATGTGTTTATGATTTCACTTCTGCcactttttttctgcagttaGTTTAGGTTGAACTGCTAAGTGTATAGATTGTACTCATACTttgttttacagatgttttttttttttttttttttaagaaattcaacTTAAAATCTACTCTCTCAAATTTCATAGAACGTTCGATATTCAAAATGGAACTGACCGCGATAATGtcattgtaatatttctattcttgttttatttgcatactgaattttattttttttcttacatctATTGCATTGTTTATAAGTGCATCACATTCaactaactttttttgtttttgtcggTCAGTAACATAAGAAAGCGTATAGAGGGCAGTGTAAGCACATACAATCGATGTAAAGCATTTCATTAGGTCATTTCACAGTGGgctaaaaacattcatttccacctaaatctgtttttaataaacgAAGCTGACACACAAGGA

Function

symbol description
zgc:194990 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39).

NR:

description
PREDICTED: butyrophilin-like protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247854.1 True 3039 mRNA 0.44 10 6576325 6587081

Neighbor

gene id symbol gene type direction distance location
spag17 spag17,LOC107598987,LOC107664984,LOC107664968 coding downstream 40538 6522953 ~ 6535787 (-)
dennd2da dennd2da,LOC107665000,LOC107720811,LOC107699011,LOC107557198 coding downstream 54361 6507857 ~ 6521964 (-)
slc2a6 slc2a6,LOC107725299,LOC107599026 coding downstream 97431 6474756 ~ 6478894 (-)
LOC122350067 LOC107598986,LOC107725298 coding downstream 102642 6470699 ~ 6473683 (-)
LOC122351122 si:dkeyp-51b7.3,fibcd1,LOC107598982,LOC107665003,LOC107725318,LOC108438350,LOC107557183,LOC106585783 coding downstream 377045 6108592 ~ 6199280 (-)
si:ch73-61d6.3 si:ch73-61d6.3,LOC107725329,LOC107665009,LOC107758028,LOC107699027,LOC107598988 coding upstream 128 6587209 ~ 6597575 (-)
kcnn1b kcnn1,kcnn1b,LOC107557189,LOC107758025,LOC107598990,LOC107665010 coding upstream 15987 6603068 ~ 6636077 (-)
ccdc124 ccdc124,LOC107557177 coding upstream 49662 6636743 ~ 6643323 (-)
b3gnt3.4 b3gnt3,LOC107665060,LOC107599054,LOC107755313 coding upstream 83199 6670280 ~ 6678153 (-)
LOC122351102 LOC107755287,LOC107758020,LOC107665055,LOC107549659 coding upstream 92580 6679661 ~ 6690661 (-)
G61640 NA non-coding downstream 14407 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 24614 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 107909 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 301115 6273884 ~ 6275210 (-)
LOC122350056 NA non-coding downstream 370867 6204023 ~ 6205458 (-)
G61663 NA non-coding upstream 70417 6657498 ~ 6658284 (-)
G61782 NA non-coding upstream 274947 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 687509 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 719031 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 790674 7377755 ~ 7378459 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 133343 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 615219 5919961 ~ 5961106 (-)
G61513 NA other downstream 958661 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 966753 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 1065382 5476213 ~ 5510943 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 227390 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 288268 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 504369 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 1090415 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1529927 8117008 ~ 8232774 (-)

Expression


Co-expression Network