slc66a1 (pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981)


Basic Information

Item Value
gene id slc66a1
gene name pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5353619 ~ 5361985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247863.1
GagccgctgtgtgtgtgtgtgtgtgtgtctgtgtctggaGGAGACGGAGCGCTTCGGTGCCGAAGGTAACCGAGGACTAAGGCCGACATACCGCTACTTTTCTACCTCAGCGGCTTAAGCGCTACATCACAGTGATGTCGGATGGGCTTGTGCTCGGCGGTGATGGGAACTTCAGCTCTCTCTGCCCGCACGGGATCGCGTGGATCTGGTACGGACTGGGAGAATGTGCCCAGGATGGCAGAGACATTGCCAGTGTTGTTCTCGGGTTGCTGTCGATAGTTTGCTTCATGGTGTCTTCACTACCGCAATACTACAGTTCCTGCAAGACAGGAAATATGGACAGCGCTCTGTCGATTTGGTTCCTGTTATTTTGGTTGGCCGGGGACTCGTGCAATCTTATTGGATCTTTCTTGGCCGATCAACTTCCACTACAGAAATACACCGCAGTGTACTACGTCCTGGCAGACCTGTTAATGCTGTCAATGTACTTTTACTATAAACTAAAGAATAAATCTAGGGCCAGTAACAGTGCACTGCTGAATGCGGTCAGCATGCTATGTCTTCTGGGAATTACATCTTCCCTCCTTAGCCTCCCTCACTCAGCCCTAGAGGATCGGACGCCTATGGGGTTCAAAGGTCGGGCGCTGCTGGCCGTGGAGGAGGACAGTGGTTCGGTGCAGCCCTTCGATACAAAGGAGATTATAGGCTTTGTCATTGGATCGATATCTTCAGTACTGTATTTATGCTCCAGACTGCCGCAGATGTACACTAATTTTCAGAGGAAGTCAACAGAGGGCGTGTCTTTTTTCCTATTTGCTCTGGTGATTCTGGGAAACACAACATATGGCATCAGCGTGCTACTAAAGAACCCAGATCCAGGGCAGGGAGAGGTCAGCTATATCATTCACCACCTCCCCTGGCTCATCGGCAGCCTGGGAACACTCTCACTTGACCTTATCATATCTGTGCAGTTCATGATGTACAGCAAATCTCCTCGGGATTCTGCAGATGGAGATGAGGAGACCGCTGCACTTCTCCATAACTGAACAATTCCCATTCCTGCTGTGACTGGAGGAAATGCTGAACATGGTTTTTTTGAGTTTCACATTTCCACAGCCGCAGCTGACAgacaaaaatcactttttttttcttcctaatAGTTTTAGGTAGATTTTATATCAATACCTTTCATACCTAGCAGTGTCGGTggttaaagacatttttgtctGATGGTAAATAATTAAGTTTCTTAATTGGTTTAATATTTGGCACCGAGAGGGACTTATTGAAACACTTTTGTAATGTTTGTACTGTACTTCAgaattcaggttttttttttactacaatgcatgtaattgtgtaatttttGTTATGTACAGTGAAATGAATGCTGCATTCGGCAGATCTAGCGGTCTTTGACTAAGAACTGAAAATGATCTGTCTTCAGTCTTAGTACTGTAATAATGTTATTAGGCTGTATTTGTGCAAtctattatcaaaaatatttggtattgtaaagatgtttttaatttttatactgTGGCCTTTGCACCTGTCAGTCAGTAGATACCTTTTATTGACGTTCTTATTTTTAAGTCTTATTTGAAGACTTGCccgttttcttcttttttttgttctgtatcACAGCGCAACACTCacttaagatttttgtttttctgaggcCAAACAtgtttgaactgtttttttttttttgatgtggaCAATCAATTGCTCTCCTTCATGTTTGTCTTTCCAAACAAATCATGAACATTAAATTGCTCTTGCCACTCGA

Function

symbol description
pqlc2 solute carrier family 66 (lysosomal lysine-arginine transporter), member 1

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23678 PQLC2, SLC66A1, LAAT1; solute carrier family 66 (lysosomal lysine-arginine transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247863.1 True 1792 mRNA 0.43 9 5353619 5361985

Neighbor

gene id symbol gene type direction distance location
si:dkey-8e10.3 si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926 coding downstream 493318 4853786 ~ 4860301 (-)
ptpn18 LOC107743092,LOC107653414,LOC107601761,LOC107734536,LOC107674370,LOC107584895 coding downstream 664139 4674326 ~ 4689480 (-)
plxna3 plxna3,LOC107734520,LOC107653403,LOC107743094,LOC107674285,LOC106572068 coding downstream 698150 4510069 ~ 4655469 (-)
slc6a8 slc6a8,LOC107734513,LOC103036862,LOC107653404,LOC108441094 coding downstream 887562 4432982 ~ 4466057 (-)
zgc:86609 zgc:86609,LOC107653429,LOC107743102,LOC107601757,LOC107734524,LOC107674347,LOC108265646 coding downstream 1037883 4311724 ~ 4315736 (-)
trim33 trim33,LOC107725313,LOC107734526,LOC107664979,LOC107570974 coding upstream 741 5362726 ~ 5384419 (-)
bcas2 bcas2,LOC107664982,LOC107725297,LOC107734517,LOC107674303 coding upstream 23722 5385707 ~ 5390120 (-)
dennd2c dennd2c,LOC107665005,LOC107598967,LOC107734514,LOC107674357,LOC107725285,LOC107566809 coding upstream 28840 5390825 ~ 5410171 (-)
ampd1 ampd1,LOC107664993 coding upstream 48966 5410951 ~ 5423401 (-)
nras nras,LOC107598969,LOC107725308 coding upstream 61606 5423591 ~ 5431733 (-)
G61478 NA non-coding downstream 1162 5336987 ~ 5352457 (-)
G61459 NA non-coding downstream 87581 5143199 ~ 5266038 (-)
G61216 NA non-coding downstream 348053 4961583 ~ 5005566 (-)
G61215 pim1,LOC107584899,LOC107598956,LOC107734527,LOC107674355,LOC107653400,LOC107725309,LOC107391354 non-coding downstream 350736 5001567 ~ 5002883 (-)
LOC122349981 NA non-coding downstream 398463 4949633 ~ 4955156 (-)
G61502 NA non-coding upstream 208419 5570404 ~ 5573893 (-)
G61507 NA non-coding upstream 220930 5582915 ~ 5584720 (-)
G61525 atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188 non-coding upstream 311656 5673641 ~ 5675178 (-)
G61526 atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585 non-coding upstream 314005 5675990 ~ 5676748 (-)
G61519 NA non-coding upstream 323175 5685160 ~ 5687209 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other downstream 2340 5341394 ~ 5351279 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 146097 5195752 ~ 5207522 (-)
LOC122350811 NA other downstream 165698 5187254 ~ 5187921 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other downstream 956545 4393213 ~ 4397074 (-)
G61023 NA other downstream 1046120 4300992 ~ 4307499 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other upstream 114228 5476213 ~ 5510943 (-)
c8h9orf116 LOC107757294 other upstream 243187 5605172 ~ 5609572 (-)
G61513 NA other upstream 252344 5614329 ~ 5617664 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 557976 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 1061757 6423742 ~ 6442982 (-)

Expression


Co-expression Network