rer1 (rer1,LOC107698848,LOC107595758,LOC107748969,LOC107678415,LOC107710784,LOC107602473)


Basic Information

Item Value
gene id rer1
gene name rer1,LOC107698848,LOC107595758,LOC107748969,LOC107678415,LOC107710784,LOC107602473
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22875118 ~ 22880115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247867.1
CAGGCCGGGGGTCCAGCGCAGGGAGCGATGTGTTCCGCGCGCGGCTGCTCTGGTCTGATCTGCTGCGGTTAACAGAAGCACTGACGTGTTCACAGAGCAGCAGCGCGAGAGTGACACAGCGGCACAACCGGACAGAATGCCAGAAGGAGACAGTGCCGGTGAATCCATCCATGGGAAACCATCAGCGATCGGAAACTTCTTTAAACGGCTCGGGCAGATTTATCAGTCATGGTTGGACAAGTCAACACCGTTCTCATCAGTCCGATGGGCAGTCACTCTTATTCTAACGGCCATATATATGATCAGAGTATATATACTACAGggGTGGTACATAGTCACATATGCTCTTGGGATCTACCACCTAAACCTCTTCATCGCGTTCCTTTCACCAAAAGTGGATCCCTCGTTGCTTGACGATCCAGATGAGGGTCCAGCACTACCCACAAAACAGAACGAAGAGTTCCGGCCGTTCATCAGGAGGTTGCCAGAATTCAAATTCTGGCATTCAGCGACGAAAGGCATCATCATCGCTATGATTTGCACATTCTTCGAAGCCTTCAACGTGCCAGTGTTCTGGCCCATCCTCGTAATGTATTTCATCATGCTGTTCTGCATCACCATGAAACGGCAGATCAAGCACATGATCAAGTATAGATACCTGCCCTTCACACACGGGAAGAGGACTTACAGAGGCAAGGAAGACACAGGGAAAACCTTTGCTAGTTAAAATTCCCCTTCCTGAAATTAAAGTTATTGATGAAGAATGGTGCGTAAAGGGggttgaggtttttttttttggttttggtttcttttctctccttttgctttctttctttttctgagcAAGGGACGCTGATACTGTAATGCTGCCTTTAAGCGTTTGGGCCCCGAGGAGCGTTTGAGAAATGCCGTTGAGAGCTTTTACACTGGCAACTTTTATTATATTCGGACAGCCGCGTACGGGATTTGACTCTCGGCGGTCCCCGTTCTCCTTCAAACCCAGACCGTCTTCTCCAGtgtagatttttaaatgttagttcACTAATGTTTCAACCGTTTATTCACCTCTGTGTCATTTTTCAATCAGTATGTCTATTTTCAGTCGAAAAACGAAACGTGATGATATTTAGCAGAATGCGcgtgctgctcttttccacGGCTTTAATGTTATGGAAAATAGCAGCATGAatataatctattttttttttttcctctctctctctgtttcactGCTAAATCTTATTTGGAGTGTGACTACTACATGATTATTTATGAACGttggaatataatataataatgtggCGAGAGTTGTCATTTGTATCGTTAATATcgatgagggggaaaaaagccacatttcatcattttatgACCCCCGTGATGAGAGAGCGTTTAATATTCATACCGTGGTACGTTTGGTGTCCTCCGTAGTTGATATCATTAGATTCAGTATTCAGATGAACGCGAGGACGCTTCTATGAGAGAGATGTTATTGATCGTAGGGATTTAGCGGAGTTCCATCTTGCCACATGTTAATATTTGCCTTTTATGAACATTTGTAATTCTCTTAATGTGCTGTAGCATTGTGTTTAATTTCTGTACATAGTCGCCCACCTCAATCGCATCCATTCGTGCTGTTTGTGAGTTATTCCTCAGTAGTTTAAAGCCCCCCCCTCACCTTGTACATCAGGTTTTTTAAAGCAAGCGTGCATTCCATTAAAATAgtatgttacaaaaa
>XM_043247868.1
CAGGCCGGGGGTCCAGCGCAGGGAGCGATGTGTTCCGCGCGCGGCTGCTCTGGTCTGATCTGCTGCGGTTAACAGAAGCACTGACGTGTTCACAGAGCAGCAGCGCGAGAGTGACACAGCGGCACAACCGGACAGAATGCCAGAAGGAGACAGTGCCGGTGAATCCATCCATGGGAAACCATCAGCGATCGGAAACTTCTTTAAACGGCTCGGGCAGATTTATCAGTCATGGTTGGACAAGTCAACACCGTTCTCATCAGTCCGATGGGCAGTCACTCTTATTCTAACGGCCATATATATGATCAGAGTATATATACTACAGggGTGGTACATAGTCACATATGCTCTTGGGATCTACCACCTAAACCTCTTCATCGCGTTCCTTTCACCAAAAGTGGATCCCTCGTTGCTTGACGATCCAGATGAGGGTCCAGCACTACCCACAAAACAGAACGAAGAGTTCCGGCCGTTCATCAGGAGGTTGCCAGAATTCAAATTCTGGCATTCAGCGACGAAAGGCATCATCATCGCTATGATTTGCACATTCTTCGAAGCCTTCAACGTGCCAGTGTTCTGGCCCATCCTCGTAATGTATTTCATCATGCTGTTCTGCATCACCATGAAACGGCAGATCAAGCACATGATCAAGTATAGATACCTGCCCTTCACACACGGGAAGAGGACTTACAGAGGCAAGGAAGACACAGGGAAAACCTTTGCTAGTTAAAATTCCCCTTCCTGAAATTAAAGTTATTGATGAAGAATGaggAAACATAAAGTTGAGTGCGTTAACTATTACAAATGGATGGAGAGGGTTgaagttttttgtgtttttttttgtgctgggCCATActagtatagtttttttttttttttttttttcaaaaaggcaAACGGAAAGAACTTCAATAACCTCAATAATCAATGGAGATGAGATACATTTTCCtattcaagtgtttttttttttttttttggaggggggagatatatattaaaatgtataatttttatggTTAGCATGTttgagttcttttttttttttttttttccttctttttttgacaatggcattttactgtattaaattaatcttcatcaaaacaaaatagATTTGTTAATTCCTGATTAAAGACATTGCATGTTTTAGGTTTTCTTGTGCTGCTGGTtaagagaaaacaaaatcattttaataactaAGTGTAAATTTTTCACTCCAAATACTATTAAAAGGCTGTGTCCCTTCA
>XM_043247869.1
TACAGTAACCAGCATGCTTTGCGCCTTAAAGAAATCACTCAGCTGCTGCTAACCACCGATGCTAAATAGCAAATTAGCTTACGAGGTTTGACTATTAGCCTTCTAGTTGCGTTATTAgtgaattaatgaaataaattttaagACAGAATGCCAGAAGGAGACAGTGCCGGTGAATCCATCCATGGGAAACCATCAGCGATCGGAAACTTCTTTAAACGGCTCGGGCAGATTTATCAGTCATGGTTGGACAAGTCAACACCGTTCTCATCAGTCCGATGGGCAGTCACTCTTATTCTAACGGCCATATATATGATCAGAGTATATATACTACAGggGTGGTACATAGTCACATATGCTCTTGGGATCTACCACCTAAACCTCTTCATCGCGTTCCTTTCACCAAAAGTGGATCCCTCGTTGCTTGACGATCCAGATGAGGGTCCAGCACTACCCACAAAACAGAACGAAGAGTTCCGGCCGTTCATCAGGAGGTTGCCAGAATTCAAATTCTGGCATTCAGCGACGAAAGGCATCATCATCGCTATGATTTGCACATTCTTCGAAGCCTTCAACGTGCCAGTGTTCTGGCCCATCCTCGTAATGTATTTCATCATGCTGTTCTGCATCACCATGAAACGGCAGATCAAGCACATGATCAAGTATAGATACCTGCCCTTCACACACGGGAAGAGGACTTACAGAGGCAAGGAAGACACAGGGAAAACCTTTGCTAGTTAAAATTCCCCTTCCTGAAATTAAAGTTATTGATGAAGAATGGTGCGTAAAGGGggttgaggtttttttttttggttttggtttcttttctctccttttgctttctttctttttctgagcAAGGGACGCTGATACTGTAATGCTGCCTTTAAGCGTTTGGGCCCCGAGGAGCGTTTGAGAAATGCCGTTGAGAGCTTTTACACTGGCAACTTTTATTATATTCGGACAGCCGCGTACGGGATTTGACTCTCGGCGGTCCCCGTTCTCCTTCAAACCCAGACCGTCTTCTCCAGtgtagatttttaaatgttagttcACTAATGTTTCAACCGTTTATTCACCTCTGTGTCATTTTTCAATCAGTATGTCTATTTTCAGTCGAAAAACGAAACGTGATGATATTTAGCAGAATGCGcgtgctgctcttttccacGGCTTTAATGTTATGGAAAATAGCAGCATGAatataatctattttttttttttcctctctctctctgtttcactGCTAAATCTTATTTGGAGTGTGACTACTACATGATTATTTATGAACGttggaatataatataataatgtggCGAGAGTTGTCATTTGTATCGTTAATATcgatgagggggaaaaaagccacatttcatcattttatgACCCCCGTGATGAGAGAGCGTTTAATATTCATACCGTGGTACGTTTGGTGTCCTCCGTAGTTGATATCATTAGATTCAGTATTCAGATGAACGCGAGGACGCTTCTATGAGAGAGATGTTATTGATCGTAGGGATTTAGCGGAGTTCCATCTTGCCACATGTTAATATTTGCCTTTTATGAACATTTGTAATTCTCTTAATGTGCTGTAGCATTGTGTTTAATTTCTGTACATAGTCGCCCACCTCAATCGCATCCATTCGTGCTGTTTGTGAGTTATTCCTCAGTAGTTTAAAGCCCCCCCCTCACCTTGTACATCAGGTTTTTTAAAGCAAGCGTGCATTCCATTAAAATAgtatgttacaaaaa
>XM_043247870.1
TCAGGCCGGGGGTCCAGCGCAGGGAGCGATGTGTTCCGCGCGCGGCTGCTCTGGTCTGATCTGCTGCGGTTAACAGAAGCACTGACGTGTTCACAGAGCAGCAGCGCGAGAGTGACACAGCGGCACAACCGGACAGAATGCCAGAAGGAGACAGTGCCGGTGAATCCATCCATGGGAAACCATCAGCGATCGGAAACTTCTTTAAACGGCTCGGGCAGATTTATCAGTCATGGTTGGACAAGTCAACACCGTTCTCATCAGTCCGATGGGCAGTCACTCTTATTCTAACGGCCATATATATGATCAGAGTATATATACTACAGggGTGGTACATAGTCACATATGCTCTTGGGATCTACCACCTAAACCTCTTCATCGCGTTCCTTTCACCAAAAGTGGATCCCTCGTTGCTTGACGATCCAGATGAGGGTCCAGCACTACCCACAAAACAGAACGAAGAGTTCCGGCCGTTCATCAGGAGGTTGCCAGAATTCAAATTCTGGCATTCAGCGACGAAAGGCATCATCATCGCTATGATTTGCACATTCTTCGAAGCCTTCAACGTGCCAGTGTTCTGGCCCATCCTCGTAATGTATTTCATCATGCTGTTCTGCATCACCATGAAACGGCAGATCAAGCACATGATCAAGTATAGATACCTGCCCTTCACACACGGGAAGAGGACTTACAGAGaggAAACATAAAGTTGAGTGCGTTAACTATTACAAATGGATGGAGAGGGTTgaagttttttgtgtttttttttgtgctgggCCATActagtatagtttttttttttttttttttttcaaaaaggcaAACGGAAAGAACTTCAATAACCTCAATAATCAATGGAGATGAGATACATTTTCCtattcaagtgtttttttttttttttttggaggggggagatatatattaaaatgtataatttttatggTTAGCATGTttgagttcttttttttttttttttttccttctttttttgacaatggcattttactgtattaaattaatcttcatcaaaacaaaatagATTTGTTAATTCCTGATTAAAGACATTGCATGTTTTAGGTTTTCTTGTGCTGCTGGTtaagagaaaacaaaatcattttaataactaAGTGTAAATTTTTCACTCCAAATACTATTAAAAGGCTGTGTCCCTTCA

Function

symbol description
rer1 Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in Kupffer's vesicle; lateral line; olfactory pit; otic vesicle; and pronephros. Orthologous to human RER1 (retention in endoplasmic reticulum sorting receptor 1).

NR:

description
protein RER1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247867.1 False 1735 mRNA 0.44 7 22875664 22880114
XM_043247868.1 False 1244 mRNA 0.41 8 22875118 22880114
XM_043247869.1 True 1746 mRNA 0.42 7 22875664 22879566
XM_043247870.1 False 1171 mRNA 0.41 8 22875118 22880115

Neighbor

gene id symbol gene type direction distance location
aak1a aak1a,LOC107678431,LOC107710782,LOC107698849,LOC107748970,LOC108426667,LOC107595757,LOC107602451 coding downstream 220 22837109 ~ 22874898 (-)
LOC122349927 LOC107710781,LOC107748971,LOC107678464,LOC107698851 coding downstream 50527 22818969 ~ 22824591 (-)
LOC122351014 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107678397 coding downstream 58771 22812855 ~ 22816347 (-)
LOC122350037 LOC107575601,LOC107757083,LOC107574252,LOC107752574,LOC107678367,LOC107678397,LOC107752571,LOC107552256,LOC107703982 coding downstream 84631 22779254 ~ 22790487 (-)
LOC122351034 LOC107552255 coding downstream 115004 22757776 ~ 22760114 (-)
tp73 tp73,LOC107698840 coding upstream 908 22881023 ~ 22914169 (-)
LOC122350809 NA coding upstream 52018 22932133 ~ 22935123 (-)
kiaa2013 si:dkeyp-104h9.5,kiaa2013,LOC107698843,LOC107678452 coding upstream 67741 22947856 ~ 22955895 (-)
clcn6 clcn6,LOC107710774 coding upstream 554756 23434871 ~ 23446449 (-)
LOC122351104 NA coding upstream 577496 23457611 ~ 23475050 (-)
G66235 LOC107703993,LOC107755595 non-coding downstream 169993 22699448 ~ 22705125 (-)
G66217 LOC107664463,LOC107755600 non-coding downstream 217459 22654971 ~ 22657659 (-)
G66207 NA non-coding downstream 249941 22580402 ~ 22625177 (-)
G66206 NA non-coding downstream 325800 22547651 ~ 22549318 (-)
G66163 gkap1,LOC107562640,LOC107757429,LOC107664507,LOC107678454,LOC107553117 non-coding downstream 487335 22386082 ~ 22387783 (-)
G66337 NA non-coding upstream 102596 22982711 ~ 22983165 (-)
G66339 NA non-coding upstream 105231 22985346 ~ 22986961 (-)
LOC122350914 NA non-coding upstream 171767 23051882 ~ 23054592 (-)
G66368 NA non-coding upstream 360857 23240972 ~ 23245510 (-)
G66372 prdm16 non-coding upstream 503023 23383138 ~ 23383354 (-)
ddx51 ddx51 other downstream 39527 22829204 ~ 22835591 (-)
G66310 NA other downstream 78756 22795622 ~ 22796362 (-)
LOC122350259 LOC107678445,LOC107752560,LOC101882811,LOC107553112,LOC107757078,LOC108426735,LOC107703990,LOC107757081,LOC107553140,LOC107678447,LOC107752570 other downstream 128039 22727180 ~ 22747079 (-)
LOC122349902 nfu1,LOC107678441,LOC107553147,LOC107664472,LOC107570003 other downstream 234795 22637275 ~ 22640323 (-)
gfpt1 gfpt1,LOC107678434,LOC107553119,LOC108426669,LOC107710818,LOC107752562,LOC103362312,LOC101170101,LOC107562636 other downstream 609257 22243202 ~ 22265861 (-)
tprg1l tprg1l,LOC107698845,LOC107710788,LOC107678419,LOC107748986 other upstream 46341 22926456 ~ 22931165 (-)
G66410 LOC107687112,LOC107595766 other upstream 696838 23576953 ~ 23583368 (-)
G66451 LOC107595774,LOC107733967,LOC107748958,LOC107693424 other upstream 777950 23658065 ~ 23663536 (-)
LOC122350426 NA other upstream 940385 23820500 ~ 23821991 (-)
LOC122350723 si:ch211-117c9.5,slc6a8,slc6a7,LOC107601348,LOC107697011,LOC107566000,LOC107673283,LOC107750894,LOC103370863,LOC105906418,LOC107601746,LOC107653404 other upstream 1283852 24163967 ~ 24183176 (-)

Expression


Co-expression Network