LOC122351043 (LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574)


Basic Information

Item Value
gene id LOC122351043
gene name LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22554867 ~ 22558195 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247882.1
TGTTCAACATCTGAATTCAGATTGGAGGGAGATTACTTATTGGGTGgcctttttgttttacatgaaATTGACCGTGTGACACCTGTTTTCACTCCAGAGACCACTGAATGTTTCAGGCACAGTTTCTCACAATCTGGCTATAAAATGTTGCAAGTAATGAAGTTTGCCGTTGAGGAGATCAATAATTCCTCAGCTCTTTTGCCCAATGTATCTCTGGGATATGAAATTTTTGACCATTGTTCTAACACAAGGAATTTCCATTCAGTCTTAAATTTCATCTCAAAGAATGGCTCGATAAGACCTAAAGAAAAACTCAACAACTATCAGCCAAAAGTGATTGCTTTAACAGGGCCATATGGAAGCACAAGAACTATAACTGTTGCACCACTGTTCACAATGAACCTAATACCAATGGTGAATTATGGAGCTACTAGCTATGCATTAAGTGATAAACTTCAGTATCCTTCCTTTGTAAGAACAATGCCTAGCAACAAAGACCTGGTAGAGATGATTATTCACATCATACAGTGGTTTGGATGGAACTGGGTTGCCTTTATTGGTAGTCAAGATGATTACAGCACAGACGGACTAAAGCTGTTTaacaagtatataaataatacaggcATTTGTTTGGCCTATCAAGAGGGACTAACTCTAGACACAAGTTACAGTCTAACACttaaaaagattgaaaaacTCAACATCAAAGTCATTGTACTTTTTGCTTTGCCACAATACGCAAGCAAAATGATCAAAGCAGCCATAGCAAACAACATCCAGGACAAAGTATGGATTGCAAGTCATTCATGGGCTATGAATCAACAGATTCCAAGAGAACCAGGAATCAGGAAAATTGGCACAGTCATTGGTATTGCAGAGAGACTCTTGTCATTGCCTGGATTTAATGAATTTATCTATAAAGACAAAGGAACAACTGATGCTGGCCATAATGATAGAGCTGAGAGTGAACGCCAGGGGAAGATCAAGACTTGTAATCAAGCTTGTGATTACTGTTCATTAATGACTGCAGAGGAGATTATAAATGAGAGTTCCACACACTCCTTTTCCATCTATTCTGCCATATATACCATAGCTCATGCATTACATAGAGTTCTGCAGTGCGACATGAacaaatgtcacaaaaacacaatagcCAAGCCATACATGctcctggaagaaataaaaaagttgaatttttcACTCGATGGCCGTCAGGTGAAATACGATAAAAATTATGATCCAACCATCAGTTATGCAGTTGTGCTCTGGCGCACTGATGTGAATCCTCCACAGTTTGAGGTGGTGGGCATGTATAATAAACTTCCAGAAATTAATTTCATCATTGACAACACTCGCATGCCGTGGCATGACATTGGTGCTGTTCCTTTCTCAAATTGCTCTGTTGAGTGTAAGGCGGGATATGCAAGACAACCTGAAGGTTTTCATAGTTGCtgttttgcatgtaaaaaatgtCCACGTAACAGCTATGTAGATTTTTCTAgAGACCCCTACACCTGTTTTCCATGTGCAGAGAGTGAATGGTCTGATGAGGGCAGCACGACATGTAAGACTCGTTCTGTTGTCTATGTACAGTTCACAGAAATTCCCTCCATTATTGTTATGATTTCTACTGTATTCTTGATTTTTCTCCTTATtgctgtattttgcatttttgcctACAATTACGACACACCAGTGGTGAAGTCTGCTGGTGGCAGCATGTGTTTCCTCATGTTGACTAGTTTGTTTCTGTCTAGCATAAGcgtgtgtttttctttaaaaccCACATTTGCATTTTGCCTTCTAAGAAATGCTATATTTGTTTTCTTCACTGTCTGTATTTCGTGTTTGACTGTCCGTTCTTTTcaaattgtttgtgtttttaaaatggctgCTCAGTTCCCGAGATTGCACAGCCTTTGGGTAAAACACAATGGCCAGTGGCTCTTCATTGCATTTgcttctttcattcatttaatctcATGTGTGATATGGATGACTGTCAATCCTGTCAAACTCATTGCTGACACATTGACGTCTAAAGACCAACTTCTACTCATCTGTGAAAGGGGGAACTTTATAACCATATCCGTAGTAGTGTTTATAAGTTGGTTTCTTGGTTTCTTGTGTCTACTGTTTTCTTATATGGGAAGAGATCTgccaaaaaattacaatgagGCTAAGTCAATCACGTTTAGTCTCATTTTGTACTATCTGACCTGGATCGCATATTTCACTATCGCTATCACTATCAAGAGCAAATACATagtaatttttaatgcaatggcCCAGATATCCAGTATAAATGGAATTCTTTTTAGTTATTTCATACCAAAATCTTACATTATAATATTCcaaccacaaaaaaacactccGGCATACTTTCAAACATCTATTCAGAATTACACCCAAACCATTAGTAGGACTTAG

Function

NR:

description
PREDICTED: taste receptor type 1 member 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247882.1 True 2430 mRNA 0.38 8 22554867 22558195

Neighbor

gene id symbol gene type direction distance location
LOC122349889 LOC107748971,LOC107710781,LOC107678464,LOC107698851,LOC107595755 coding upstream 5809 22541798 ~ 22549058 (+)
opn7d opn7d,LOC107570009,LOC107664480,LOC107755598,LOC107678369,LOC108426644,LOC107752573 coding upstream 60903 22459937 ~ 22493964 (+)
frmd3 frmd3,LOC107678471 coding upstream 116496 22395147 ~ 22438371 (+)
gkap1 gkap1,LOC107664507,LOC107678454,LOC107553117 coding upstream 160865 22385203 ~ 22394002 (+)
c8h9orf64 zgc:136564,cunh9orf64,c5h9orf64,LOC107757431,LOC107664574,LOC107553132 coding upstream 172123 22379403 ~ 22382744 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding downstream 89653 22647848 ~ 22659247 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding downstream 102954 22661149 ~ 22673282 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding downstream 115694 22673889 ~ 22709558 (+)
fam110a LOC107755603,LOC107703992,LOC107678459,LOC107570008,LOC107553114,LOC107752568 coding downstream 151900 22710095 ~ 22714115 (+)
LOC122350040 NA coding downstream 386015 22944210 ~ 22946154 (+)
G66189 NA non-coding upstream 23117 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 41622 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 266020 22288308 ~ 22288847 (+)
G66022 NA non-coding upstream 269435 22283734 ~ 22285432 (+)
G66014 gfpt1,LOC107678434,LOC107752562,LOC107562636,LOC107710818,LOC107553119 non-coding upstream 379803 22170639 ~ 22175064 (+)
G66261 NA non-coding downstream 241444 22799639 ~ 22800154 (+)
LOC122350789 NA non-coding downstream 351452 22909647 ~ 22911382 (+)
LOC122350915 NA non-coding downstream 671848 23230043 ~ 23231024 (+)
LOC122350913 NA non-coding downstream 673369 23231564 ~ 23239812 (+)
G66344 NA non-coding downstream 679782 23237977 ~ 23238253 (+)
LOC122350000 ddx51 other upstream 14634 22532468 ~ 22540233 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 434071 22119913 ~ 22120796 (+)
G66010 naa35,LOC107757435,LOC107752550 other upstream 437033 22116283 ~ 22117834 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other upstream 590304 21963465 ~ 21964563 (+)
G65995 NA other upstream 593022 21949888 ~ 21961845 (+)
mfsd2al2 NA other downstream 157184 22715379 ~ 22723908 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other downstream 166387 22724582 ~ 22727444 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other downstream 341241 22899436 ~ 22925768 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 415800 22973995 ~ 22987162 (+)
prdm16 prdm16,si:ch211-263k4.2 other downstream 496421 23054616 ~ 23401562 (+)

Expression


Co-expression Network