efna5b (efna5,efna5b,LOC107721028,LOC107709298,LOC107692204,LOC108265807,LOC107661535,LOC100702629)


Basic Information

Item Value
gene id efna5b
gene name efna5,efna5b,LOC107721028,LOC107709298,LOC107692204,LOC108265807,LOC107661535,LOC100702629
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 202147 ~ 295270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247899.1
GCGAGCGGCGCTGGGTTCACATCATCACACCTCCCGCCGAACCGAGAGCGAGCGCGTGAGCTGACCGATGACCCCCCGCGCTCCTGCACGTCTCCCGCAGTATAATGACGGAGAGTGACGCGGGCGTGTTCGCCGAGCTCCGCGTTTCCCCGAACGGACTTGTGCGCTGAGATCAGCCCCCGAGCTCCTGCCTCCGCGGGCAACTTCTTCAGATCCCTCGTCTCGGAGCGAGAACGCCGCGCGCCCCGCTCCAGAGTGCGCGAGAAGCGCTTCCGCGGACCCCGTACATGCTATGCGCGTGCTCTGCCAAACCAAACCGACCCGCGTTAGAATGAACCCTGAACACTGAGCGCCtggtttggatttttttttgtttttgtttttgttttgtcgcGTCTCTCCGGTGCGCGGTCCACGAGTATTGACCGTAGTGCGGACATTCACGCCACCGACAGAAGATCTCGGACGTCTCGACACTTGCTCCGCCGTCCGCCGAGCCGCAGATGCGCGTCAAAGTCGACTGAAGCAAGAGGAATATACGAGTCCGAGCGCGCTGTAGCGATGCTGCAAGTGGAAATGGTCATATTCGTGGGTGTGATTCTGTGGATGTGTGTATTTAGTCAAGAGCCCAGCTCAAAGGTGATGGCCGATCGATACGCTGTCTACTGGAACCGAACCAACCCCAGGTTCCACCGCGGAGACTATCACATCGACGTCTGTATAAACGACTACCTGGACGTGTACTGTCCGCACTACGAGGACTCGGTCCCCGAGGAGAGAGCCGAGCGCTACGTGCTCTACATGGTGAACTACGACGGCTACAGCACGTGCGATCACACGGCCAAGGGCTTCAAGCGCTGGGAGTGCAACCGGCCGCATTCCCCCAACGGCCCGCTCAAGTTCTCCGAGAAGTTCCAGCTCTTCACGCCGTTCTCGCTGGGCTTCGAGTTCCGGCCGGGCCGGGAGTATTACTACATCTCCTCCATGATCACAGAAACCGGGAGAAGGTCGTGTCTCAAGCTGAAAGTCTTCGTGAGACCACCGAATGGCTGCGAGAAAACCATAGGCGTTCATGACCGCGTTTTTGTCGATGACAAAGTAGACAATGCATTAGAACCAAGAGACGACACCAGTCACGAGGCCGAACCGTCCCGGAGCGACGTGTCGACTTCAGGCCTGCGGCACCAAACGTCGGGGCCCCTGCTGGCCCTCCTGCTGCTCTGCATCTCTGTGTTCCTCACCTTATAGCCCCTCACCGGCCCCGACTTGAGATCCACCAGGAACACTCCTGCTGcgctttggttttgttttccgATATTTAAGTGGTCCTTCGCTGTCTTTGATTACGAAAAGTCGATTAGCCGTGCAAAGAAGAAACGCAGAGCGCCCGTTTAACCAATCGACCGGCGGCCGGTCGCTGGGGATTGGCTGTTGGGAGGAAGGGGGCGGAGTCTCCGATTTGATTTGGGTCCATTGGGAGCAAGTGGCTCTTTTGTGGGCaattaaagggttttttttaaggtggGTTTCACATAAAACAGACATAAACATCAACCCGAGTTCACCGGCTCTGCTGTTAGcgatattatatatacacaaagacTCTTGCCTTTCGTCCTTCGTCTGCCTTCCCTTAACAAATTGCAGAACGCATCGGAGGAAGCGGTCTGTAATGCGTCTCTCCGCAGGATCTTTCCCAATCCCTGGAAGACGTCGGGTGGTTAGTCTGTATCGGTTAGTCTGAATTTGGATTTGATTCTCTACTGCGATTCGAGGGACTTGTCTTAGTAGACCGcaccactaaaaaaaaaaaacaacaattttgtattttgtaagaTAAACTTAACTGCAacataaatatctatatttttccTATGACCTTTTATCAATTGATATGAGATATCAACATTAACGGATCATGGAAATTCTTTTCTTGTCATAACTGTGACTCTCTATTAGGAACCAAATACAGAAAGGAGCTTAAGGAAGCATTTGTTTGAATAGGCCTTATACTGTACGCTATACTAATATCTCCTGGAAGTGCTTCGAGTTCAGCCTTTCCATCGGGGAAATAAAGTTTAGTCTCATTTGTTGAtttca
>XM_043247900.1
GCGAGCGGCGCTGGGTTCACATCATCACACCTCCCGCCGAACCGAGAGCGAGCGCGTGAGCTGACCGATGACCCCCCGCGCTCCTGCACGTCTCCCGCAGTATAATGACGGAGAGTGACGCGGGCGTGTTCGCCGAGCTCCGCGTTTCCCCGAACGGACTTGTGCGCTGAGATCAGCCCCCGAGCTCCTGCCTCCGCGGGCAACTTCTTCAGATCCCTCGTCTCGGAGCGAGAACGCCGCGCGCCCCGCTCCAGAGTGCGCGAGAAGCGCTTCCGCGGACCCCGTACATGCTATGCGCGTGCTCTGCCAAACCAAACCGACCCGCGTTAGAATGAACCCTGAACACTGAGCGCCtggtttggatttttttttgtttttgtttttgttttgtcgcGTCTCTCCGGTGCGCGGTCCACGAGTATTGACCGTAGTGCGGACATTCACGCCACCGACAGAAGATCTCGGACGTCTCGACACTTGCTCCGCCGTCCGCCGAGCCGCAGATGCGCGTCAAAGTCGACTGAAGCAAGAGGAATATACGAGTCCGAGCGCGCTGTAGCGATGCTGCAAGTGGAAATGGTCATATTCGTGGGTGTGATTCTGTGGATGTGTGTATTTAGTCAAGAGCCCAGCTCAAAGGTGATGGCCGATCGATACGCTGTCTACTGGAACCGAACCAACCCCAGGTTCCACCGCGGAGACTATCACATCGACGTCTGTATAAACGACTACCTGGACGTGTACTGTCCGCACTACGAGGACTCGGTCCCCGAGGAGAGAGCCGAGCGCTACGTGCTCTACATGGTGAACTACGACGGCTACAGCACGTGCGATCACACGGCCAAGGGCTTCAAGCGCTGGGAGTGCAACCGGCCGCATTCCCCCAACGGCCCGCTCAAGTTCTCCGAGAAGTTCCAGCTCTTCACGCCGTTCTCGCTGGGCTTCGAGTTCCGGCCGGGCCGGGAGTATTACTACATCTCCTCCATGATCACAGAAACCGGGAGAAGGTCGTGTCTCAAGCTGAAAGTCTTCGTGAGACCACCGAACGACACCAGTCACGAGGCCGAACCGTCCCGGAGCGACGTGTCGACTTCAGGCCTGCGGCACCAAACGTCGGGGCCCCTGCTGGCCCTCCTGCTGCTCTGCATCTCTGTGTTCCTCACCTTATAGCCCCTCACCGGCCCCGACTTGAGATCCACCAGGAACACTCCTGCTGcgctttggttttgttttccgATATTTAAGTGGTCCTTCGCTGTCTTTGATTACGAAAAGTCGATTAGCCGTGCAAAGAAGAAACGCAGAGCGCCCGTTTAACCAATCGACCGGCGGCCGGTCGCTGGGGATTGGCTGTTGGGAGGAAGGGGGCGGAGTCTCCGATTTGATTTGGGTCCATTGGGAGCAAGTGGCTCTTTTGTGGGCaattaaagggttttttttaaggtggGTTTCACATAAAACAGACATAAACATCAACCCGAGTTCACCGGCTCTGCTGTTAGcgatattatatatacacaaagacTCTTGCCTTTCGTCCTTCGTCTGCCTTCCCTTAACAAATTGCAGAACGCATCGGAGGAAGCGGTCTGTAATGCGTCTCTCCGCAGGATCTTTCCCAATCCCTGGAAGACGTCGGGTGGTTAGTCTGTATCGGTTAGTCTGAATTTGGATTTGATTCTCTACTGCGATTCGAGGGACTTGTCTTAGTAGACCGcaccactaaaaaaaaaaaacaacaattttgtattttgtaagaTAAACTTAACTGCAacataaatatctatatttttccTATGACCTTTTATCAATTGATATGAGATATCAACATTAACGGATCATGGAAATTCTTTTCTTGTCATAACTGTGACTCTCTATTAGGAACCAAATACAGAAAGGAGCTTAAGGAAGCATTTGTTTGAATAGGCCTTATACTGTACGCTATACTAATATCTCCTGGAAGTGCTTCGAGTTCAGCCTTTCCATCGGGGAAATAAAGTTTAGTCTCATTTGTTGAtttca

Function

symbol description
efna5b Predicted to enable ephrin receptor binding activity. Acts upstream of or within mesoderm migration involved in gastrulation and somitogenesis. Predicted to be located in membrane. Predicted to be anchored component of membrane. Predicted to be active in plasma membrane. Predicted to be anchored component of external side of plasma membrane. Is expressed in several structures, including brain; hypochord; liver; midbrain neural keel; and retinal ganglion cell. Orthologous to human EFNA5 (ephrin A5).
efna5 Enables ephrin receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; regulation of cytoskeleton organization; and regulation of focal adhesion assembly. Acts upstream of or within negative regulation of substrate adhesion-dependent cell spreading. Is anchored component of external side of plasma membrane.

NR:

description
ephrin-A5

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0051893 regulation of focal adhesion assembly biological_process
GO:0007399 nervous system development biological_process
GO:0031362 anchored component of external side of plasma membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247899.1 True 2100 mRNA 0.52 5 202147 295270
XM_043247900.1 False 2022 mRNA 0.53 4 202147 295270

Neighbor

gene id symbol gene type direction distance location
LOC122350625 LOC107694826,LOC107583205,LOC107757045,LOC107747425,LOC107569528,LOC107675400 coding downstream 119119 7 ~ 83028 (-)
fbxl17 fbxl17,LOC107704582,LOC107712428,LOC107661528,LOC107737136,LOC107570989 coding upstream 67308 362578 ~ 532388 (-)
slc35d2 slc35d2,LOC107570982,LOC107570985 coding upstream 262986 558256 ~ 563214 (-)
LOC122350794 LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163 coding upstream 277313 572583 ~ 576178 (-)
ubox5 NA coding upstream 285759 581029 ~ 586701 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding upstream 293528 588798 ~ 601844 (-)
G59654 NA non-coding downstream 118294 83574 ~ 83853 (-)
G59739 NA non-coding upstream 219497 514767 ~ 551882 (-)
G59750 NA non-coding upstream 250649 545919 ~ 547911 (-)
G60016 NA non-coding upstream 320011 615281 ~ 617472 (-)
G60036 NA non-coding upstream 365165 660435 ~ 661098 (-)
G60003 NA non-coding upstream 427920 723190 ~ 725000 (-)
ccl27a NA other upstream 270616 565886 ~ 570973 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other upstream 427875 723145 ~ 731844 (-)
csgalnact1b LOC107712620 other upstream 437523 732793 ~ 739372 (-)
G60098 NA other upstream 840131 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 845428 1140698 ~ 1159286 (-)

Expression


Co-expression Network