plin3 (si:rp71-61h23.4,LOC107657942,LOC107717561,LOC107750720,LOC107700160,LOC107549942)


Basic Information

Item Value
gene id plin3
gene name si:rp71-61h23.4,LOC107657942,LOC107717561,LOC107750720,LOC107700160,LOC107549942
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9521721 ~ 9526061 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247901.1
GCATCAAGTTCTTGACTCACAGGCTCTTACAGACTCAGCATTAGAGATTCACACGTCTACTGAACGCGGGTCAGCGAAGGACAGCGGATCAATAACAGAATGGCAGATAACGGGAAGACAGTCGAGAAGGACACAGAGGCATCACATGCTACTCAGGAACAACAGAGTGTGGTATCCAGAATGAGCAACCTGCCGCTGGTGAGTTCAGCTTGTGGTGCGATGTATAATGCATACAGCTCTACTAAAGACAGCGTGCCGCTCCTGAAAGGAGTAATGGAGGTTGCGGAGAGCGGGGTGCGCACACTAGGTGCTGCTGCTTCAACTGGTTCCAAACCCATACTAGACCGTCTGGAACCTCAAATTGCGGCGGTAAATGAATATGCCATTAAAGGGCTGGAGAAGGTAGAAGAAAACCTTCCAATTTTACAACAACCAGCAGACAAGCTGGTATCCAACACAGTGGGCATGGTGTACCAGTCAGTAACAGGAGCAAAGGATGCTGTGGTGGGGGCTGTGCTGGGTGGTGTGGAAAAGACACGTATGGCCGTGGCCGGTGGCATAAACACTGTTATGGGAACCCGTGTGGGCCAGATGGTCAGTAATGGTGTAGACAAGGCCCTCACCCAATCTGAAGACTGGGTAGATCAGAACCTTCCAATCAGTGAAAAGGAGCTTGCTGCACTGGCTGAACCAAGACCAGGTGAGGAGGAAGGATTCGTAGTAACTGCTAGACCCAGCTATTTTGTCCGCCTTGGTAAACTGTCTGCCAAAGTTCAGGAGAGGGCACTTGAGCAGTCTCTCATCAGGGCCCGCAGAGCCAGAGACACTACGCATGCAGCTGTAACTCAAATGACCAGCACTATGGACCTGCTGGAAAGTGCCCGGGTTACCTTGGCCAGTGCCAACCAGCAGCTAGGAGGTGCTCCGGAGCAGTTACTGCAGAGATGGAAAGAATGGAAAGAAGGGCAGCCCAAAGAACTGCAGGAGAAAGTAACAGCCGAGACAGCGGTGGATACAGCAAAAGACAAGAAAGAGACACTTTCTCAGTGTGTGCATGCGGATGCCTCCTCACAGGAGCTGGAGTCGAGAGCCCTGTCGATGGTTCAGGGTTTGAGTAATCAGCTCAAGGCGGCATGTTCAGGGGTCGTGTCCAGCGTACAGGGTCTCCCGGGCACTGTGCAGGAACAGCTTCTAAATGCTCGACATACAGCTGGAGAACTCCAGGCATCACTGAGCAGCACCAAAATACTCACGCCCATTCTCTTAGAGCAGACACGACAGCAGATCGGCCAGGTACGACAATCTTTGGATGGAGTCGTGGATTACCTTCTCAATAACACTCCTCTCAATTGGCTGGTTGGGCCTTTTGCACCACAGATAACAGAGAAAGGCGATTGAAAACGCTGTACAATTTAAAACTGATGTTTTGTTGCAGTAGGTTAATATATAGTCCAAATTGTTGTATCTTGCAACTATtcccattttaaaaatgtaactagtGGTAATTGAAGTCTGTAGATTCACGCTATCATTTCATCAATGTCAGTATTCTAAACCAAGCAGGTAGCGTGGTGATATAATGCGGTGtagcattcaaaagtttgtggtaCTTAAATACTCAATACATGTACtttctaaataaaagcaaatcatGCATAA
>XM_043247902.1
GCATCAAGTTCTTGACTCACAGGCTCTTACAGACTCAGCATTAGAGATTCACACGTCTACTGAACGCGGGTCAGCGAAGGACAGCGGATCAATAACAGAATGGCAGATAACGGGAAGACAGTCGAGAAGGACACAGAGGCATCACATGCTACTCAGGAACAACAGAGTGTGGTATCCAGAATGAGCAACCTGCCGCTGGTGAGTTCAGCTTGTGGTGCGATGTATAATGCATACAGCTCTACTAAAGACAGCGTGCCGCTCCTGAAAGGAGTAATGGAGGTTGCGGAGAGCGGGGTGCGCACACTAGGTGCTGCTGCTTCAACTGGTTCCAAACCCATACTAGACCGTCTGGAACCTCAAATTGCGGCGGTAAATGAATATGCCATTAAAGGGCTGGAGAAGGTAGAAGAAAACCTTCCAATTTTACAACAACCAGCAGACAAGCTGGTATCCAACACAGTGGGCATGGTGTACCAGTCAGTAACAGGAGCAAAGGATGCTGTGGTGGGGGCTGTGCTGGGTGGTGTGGAAAAGACACGTATGGCCGTGGCCGGTGGCATAAACACTGTTATGGGAACCCGTGTGGGCCAGATGGTCAGTAATGGTGTAGACAAGGCCCTCACCCAATCTGAAGACTGGGTAGATCAGAACCTTCCAATCAGTGAAAAGGAGCTTGCTGCACTGGCTGAACCAAGACCAGGTGAGGAGGAAGGATTCGTAGTAACTGCTAGACCCAGCTATTTTGTCCGCCTTGGTAAACTGTCTGCCAAAGTTCAGGAGAGGGCACTTGAGCAGTCTCTCATCAGGGCCCGCAGAGCCAGAGACACTACGCATGCAGCTGTAACTCAAATGACCAGCACTATGGACCTGCTGGAAAGTGCCCGGGTTACCTTGGCCAGTGCCAACCAGCAGCTAGGAGGTGCTCCGGAGCAGTTACTGCAGAGATGGAAAGAATGGAAAGAAGGGCAGCCCAAAGAACTGCAGGAGAAAGTAACAGCCGAGACAGCGGTGGATACAGCAAAAGACAAGAAAGAGGAGCTGGAGTCGAGAGCCCTGTCGATGGTTCAGGGTTTGAGTAATCAGCTCAAGGCGGCATGTTCAGGGGTCGTGTCCAGCGTACAGGGTCTCCCGGGCACTGTGCAGGAACAGCTTCTAAATGCTCGACATACAGCTGGAGAACTCCAGGCATCACTGAGCAGCACCAAAATACTCACGCCCATTCTCTTAGAGCAGACACGACAGCAGATCGGCCAGGTACGACAATCTTTGGATGGAGTCGTGGATTACCTTCTCAATAACACTCCTCTCAATTGGCTGGTTGGGCCTTTTGCACCACAGATAACAGAGAAAGGCGATTGAAAACGCTGTACAATTTAAAACTGATGTTTTGTTGCAGTAGGTTAATATATAGTCCAAATTGTTGTATCTTGCAACTATtcccattttaaaaatgtaactagtGGTAATTGAAGTCTGTAGATTCACGCTATCATTTCATCAATGTCAGTATTCTAAACCAAGCAGGTAGCGTGGTGATATAATGCGGTGtagcattcaaaagtttgtggtaCTTAAATACTCAATACATGTACtttctaaataaaagcaaatcatGCATAA

Function

NR:

description
perilipin-3-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17284 PLIN2, ADRP; perilipin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247901.1 True 1659 mRNA 0.49 8 9521721 9526061
XM_043247902.1 False 1620 mRNA 0.49 8 9521721 9526061

Neighbor

gene id symbol gene type direction distance location
zgc:77486 zgc:77486,LOC107585855,LOC107717563,LOC107657940 coding downstream 968 9513951 ~ 9520753 (-)
abhd17ab abhd17ab,LOC107700092,LOC107717562,LOC107548688,LOC107657939,LOC107750691,LOC107585854,LOC105895145 coding downstream 10086 9504012 ~ 9511635 (-)
sema6bb LOC107585853,LOC107717564,LOC107750685,LOC107657917,LOC107549930,LOC108413003,LOC107700081 coding downstream 31052 9378491 ~ 9490669 (-)
rorca LOC107657922,LOC107750669,LOC107548667,LOC107585851 coding downstream 154934 9353668 ~ 9366787 (-)
sh3gl1b sh3gl1b,LOC107750655,LOC107700047,LOC107717567,LOC107548638,LOC107585850,LOC107657927 coding downstream 169167 9335682 ~ 9352554 (-)
rgl1 rgl1,LOC107750730,LOC107717560,LOC107657943,LOC107700121 coding upstream 2905 9528966 ~ 9552304 (-)
colgalt2b colgalt2,LOC107751084,LOC107700142,LOC107585927,LOC107676963,LOC107717557 coding upstream 36033 9562094 ~ 9579853 (-)
zgc:92140 zgc:92140,LOC107676598,LOC107585858,LOC107717558,LOC107700167,LOC107548740,LOC107750760 coding upstream 55767 9581828 ~ 9605966 (-)
edem3 LOC107717559,LOC107585860,LOC107750782,LOC107548759,LOC107700180 coding upstream 80444 9606505 ~ 9618126 (-)
trabd2b si:ch211-120j21.1,LOC107717551,LOC107585868,LOC107676673,LOC107695245,LOC107548850,LOC108442342 coding upstream 260191 9786252 ~ 9837450 (-)
G62519 NA non-coding downstream 107282 9408414 ~ 9414439 (-)
G62293 glis1,LOC102303521 non-coding downstream 436527 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 483021 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 514616 9006834 ~ 9007105 (-)
G62262 NA non-coding downstream 514942 9006555 ~ 9006779 (-)
G62525 NA non-coding upstream 566 9526627 ~ 9526966 (-)
G62564 NA non-coding upstream 176898 9702959 ~ 9703191 (-)
G62565 NA non-coding upstream 177315 9703376 ~ 9703598 (-)
G62567 NA non-coding upstream 182912 9708973 ~ 9709221 (-)
G62568 NA non-coding upstream 184585 9710646 ~ 9710996 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 258895 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 864435 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 871738 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 1105168 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 1288947 8117008 ~ 8232774 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 174333 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 428620 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 469486 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 719135 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 863122 10389183 ~ 10392043 (-)

Expression


Co-expression Network