LOC122351071 (slc7a4)


Basic Information

Item Value
gene id LOC122351071
gene name slc7a4
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19081597 ~ 19090260 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247925.1
GGGGATGTACCTTTAAGAGCGGAGACAGCTCCTGTTCTCCTCCACCCTCCGCTCTCTTCAGCGACGCTTCACAACATCGCTTCAACCAAATAACGAGACGCGAATGAACGCGCGAACCGTTTTGCAGgtTTGTGGAGCCTGTTTGACTCAGAAAACTATGGACCAGGTGTGACCTTGTATCATCTCTTTCATCGACCCCCTGTTTTCTATCAAGATGGCGTCATGTGTTTCCGGCTGCTCTCCGGTGGTGAGGTTCTGTCAGAAACTGAACAGGCTGAAGACGCTGGAGGAGGACGTGATGGCGACGTCACTCAAGCGCTGTCTGTCCACAGTGGACCTCGCGCTGCTCGGTGTTGGAGGAATGGTGGGCTCGGGCCTGTATGTTCTCACAGGAACTGTTGCTAAAGACACCGCAGGGCCCGCTGTAGTAGTGTCTTTCCTCATAGCCGGAGTAGCGTCACTCATGGCAGCGCTGTGCTATGCTGAGTTTGGTGCCCGTGTACCAAAGACAGGCTCTGCCTACATGTTTACATACGTCTCTGTTGGGGAGATCTGGGCGTTCCTCATTGGCTGGAATGTGATCTTGGAGTATATGATTGGCGGGGCAGCAGTAGCTCGTGCGTGGagtggatatctggactctatTTTCAATCACCGCATCCAGAACTTCACCGAGAGTCATGTGATGCGTTGGGATGTGCCCTTCATTGCTCATTACCCAGACCTCCTAGCGGCTGCTATTCTCCTAGTAGCTTCCTTCTTCATTTCATTTGGCGTTCGCGTCTCCTCTTGGCTCAACCACATCTTCTCAGCCATCAGTATGGCAGTCATTGCCTTTATCTTGGTTTTTGGCTTCGTACTGGCCGATCCAGTTAACTGGAGCGCTCGGGAGGGAGGCTTTGCCCCCTTCGGACTTTCAGGCGTCCTGGCGGGAACTGCGACGTGCTTCTATGCCTTCGTCGGCTTTGACGTGATAGCGGCTTCCAGCGAGGAGGCCAGCAATCCTCAGAGGGCTGTTCCTGCAGCGACTGCCATCTCCCTGGGCCTGGCAGCCACGGCGTATGTGCTGGTGTCCACAGTTCTCACGCTGATGGTTCCGTGGCATACGCTCGACCCTAACTCAGCTCTCTCAGATGCCTTCTTCAGACGAGGATATAGCTGGGCCGGGTTCATCGTGGCTGTAGGATCAATCTGCGCCATGAACACTGTGTTGCTCAGCAACCTCTTCTCTCTCCCGCGGATCGTGTATGCTATGGCTGAGGATGGCCTTTTCTTCTCTGTCTTTTCCCGTGTCAACCCTGTAACCAAAGTCCCGGTGATCGCCATTCTCGTTTTCGGCAGCCTTATGGCAATCCTTGCCCTCATCTTTGATCTGGAAGCACTGGTTCAGTTCCTCTCTATTGGCACTCTGCTTGCTTACACGTTTGTAGCGGCCAGTGTCATAGTGCTCCGCTTCCAGCCGGATAAAAGCAGCGGGAGCTCAGGAGGAGGTGGACTCAAGACAGACGCTTCATCCACACCTTCGATAAACCAGCCTGGACAGCAAGTGGACCCGTCCACGGTGACGAACGAGACCCAGACCTTTGCGCAGGACGGTGGAGAGATGAAGGAGTATGAGTCCTTCTCagataaacttcagctggtgGAGCGGCAGAAGACTGTGAAGGAGAGACGGGCTCCTGGCGTGCTGAAGGCTGGCTGGGAGCCGTATCTGGGCAGGATACTGGGGGACTGCGAGCCAGGCGAGGTGGTGGCGTTCTCTGTGCTCGCTCTGATGGTCAGTGGAGTCTCTCTTTGTGCTGTGCTGGTGTTCGGGATCAACCAGCTGAATCTGCCTGTGTGGAGCTTCACCCTGCTGCTGGTCATCTTCAGTCTGGTCTTCCTGCTCAGTCTGGCTCTCATCTGGGTCCATGAACAGCAGCCCAGTCAGAAGACTTTTCAGgTTCCTCTGGTGCCATTTATTCCTGGCTTCAGCATTCTTCTAAATGTATTTCTCATGCTGAAGTTAAGTCCTCTCACCTGGATCCGTTTCACCATATGGGTCGCAGCAGGTCTTCTGGTGTATTTCGGGTATGGTATATGGCACAGTAAGGAGGGTTTGCGGGAGCAGCAGGGGCAGGACGTGGCGGCGCGTTACGTGGTCCTTCCCAGCGGCAGCCTGGTGGAGACCGTCCAGAACGTCCAGCCTGAAGGACACACACTCAGCGCGCACACACCGCCCCACGACAACCCACCTGTCAGCAGATGATCTGATCACGCTGAGGTGTGTTTACAGTACACCTGcatgcctgcctgttctacttGCTTTTCTTCCTCTTCAGTTTACTGACAACATGTCAGGATAAACCGTTAATCAAAAAAGATGGTTTGAAGAAATATTCCAGGTACAGTAAtatttgtggcataatgttgGTTACCACAAAAAAAGGGTAAATGGGGTGATTTTGGAgcattttcttgtttgttttttttgtcaccataatgattaaatacaattttaatatatataatataattttaatataaaaatttttgtgGTAATCATTACTATGCCACAAATGCTGCTAATTAGTCTTATCTTGTACTGACCCCAGCATACTTTTTTGTATTGAAGCGACTAGTATTAACTTCCTTGTTCACCATCCTAATCAACAACGGGccgtttctttctctttctttcttacatAATATATCTACACTGTTTAGCTACTTTTAGCAGCCATGCTGACttgaatgtaaattatatatgagAGTCAGCAAAGTGCACCATAACGCCGCGGCCCAACTGTATCCAGCATCTCCATTGTCTTTTATGGTGTTTACATAGAGCCGAATGGATCCCCACTGCTGCTCTGTGAAAGCTGAAACCTTTAAGAGAAGCTGCTGTTTATCATTCAAACACTGATGTAAGTTGCCGCTTGAGCATATTCTAAAGGAAACATTATTCGTGTAGTCTAAACACCGAAACGCTCAGATATGATTTTTCTACAATGCAAGAGATTGTGGCTGTGATTTGgagatatttttattgtttctgcaTGAATGCTGACAATCACTGGTGGTTAGACAGTACACATGAGGTCTTAGCGAATGCTGTTAAGAGAGATCATGCGGTTCTACTCAAATCTTGTCTCCTTTTCCCATCAcggcccacacacacacttcgaTTGTCATAATTTAACACAAGTCAGAAAATCACGTGAATGTACCTAAACATTactatacgcacacacacattatttttgcagtctgggtcacaaacacacagcctaAGCACACACTAACTGGCTCAACATGTTTGGTTTTCTATCACTTCTCTGCACctctttattcattatttatttttattttagaatacagcatatttatttatttttccgtACATACTTTAACCAAAATCacgttttaataataattattcgtGATGTTAAAAAGAatccgttttttttctttgtacgATAAGCTTAGCATGAACCGCCTAACTGGGTAATCATGTTTCATCTGTGTCCGCTGACACACCTCACCGGCCTTACCTTTGCAAACACACTAACCCTGGTGTTCACTAATCCTTCTTCTCACATCTCATGTGACTTTCACACACACCGAACTGCCCTTATTATCACAAACACTGACAGAGCTGGAGCATTTACTTGGAACCGTTACCTTTAAAACtagctgtttatttttagctgCCGGGtcagtgacatttattttgttttgcttggtttggtttttttgtccagaactattatttatttaaaaatgcatttataatggcTTTAATATACCAtggtattttatttctaaaaaaacgGTAGCgtgaagaaatgaaaaaaaatattatgacaaCTGTCCCCATATCAGAAAGAGAGGGGAAAGccttattaaaaaatgtaattattaaataataactaatattttattgttttaaagcattccTCCTCTTTTTCGAACACTTTTAATTGTCATTGGCCCAGCTCCATGTGTAAAAATTGAGTTTTAGAATTTGCAATGACCCGTATAAttaactcattttaattttatagaataatacaattataatcaCATTCTTCAGAATTTCTGGCACCCTTGATCACCACCGTGCCCTTCTGAGTGCTTCAGTTTGTGTTGCTCTCAGTGAACCGTCCCTGTTAGCAGTAAGTATAAATCTGCCTTGGAAGGGAACATGTAAGTCAATGAATAATAGTCATCTGTACACCAATAGAATATTCTCAAAAGCACAGAACAAATCCTTTTCAGCACAAGCACAGCAGAAGAGTGCGGTTTATATGCAGTGGATGCTGGATATTATGCAGAAGCAAAGATGAGATTTTTCCCCTCACAGGCCCCTGTAATCTCCCCCTCCCCTCCCTCACAGATTGACCCAGATTATCTCTGTGCATCTGGAGATTATGACTGCCGCTCAGATAGCGCTGCACGCATTCACAAACgcttctttctgtctttatctAAACCTGTAGAAAGCCAGCAAAGCATAAAACTCGTTTACTTGAATCCAAATATGATTTAAACGCAAAGATGAGTACATTTCCACAAACGATTAGCACTCTCTTtttgtatatacagtaaatgcaaaACTAAACGCTCCCTCAAACGCCGATTAGAATGAAAGACAACGTTGCCCTTCATTGAGTGCACTGGTGTTCAGACCCCTTCGATGGAGGTTTATTCTCTCAGCCTGTTTCCTACTTTCATTAGCAGCCGTCTCAAATTTGTATCCAAGCCTGTCTGCCAGTCCAGCCTGCCGTCTAATCCACTTCACGTCTTACTGGCAGCCATGCTTAGTTGTGCGACGCATACGTGAAGACTAGTAAACGAAGGCACAAGATCCAGTTATGATGTACTTGCtcgatttgtttttgtaaatacagcACATGTAACCAATGGCCTTAATGATGCAGATACTGAAGCATTCCCAAAGTTTTACATACAGCTACTGTAGACTACAGtcttatttgtaatttttgtggTATTTAATAGTGTCATTCAATCAAAGAAGAAAATGATTCTAAAGCTGGGATCTGGTTTTAAaggacttttattatttttttggcctGTCCTCTTTCTACAGCTTCTGTACGTCAGGTTGTTTTAGCCTATGCCCTGCTCACTTGCACTGTCATCTCTTTCCGAAAGCACCACTTGTTAAGAAATTTCCTCTTTGTTGTGTCACTGAACATATTATCTCTGTTTTGTGTCTTTGTATGATTCTGTTATGAGATTGTATCACGTGATGAATAAAGGTTTTGAAGCATCA

Function

symbol description
slc7a4 Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4).

NR:

description
PREDICTED: cationic amino acid transporter 4

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13866 SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247925.1 True 5278 mRNA 0.45 6 19081597 19090260

Neighbor

gene id symbol gene type direction distance location
glt1d1 glt1d1,LOC107676618,LOC107659266 coding upstream 58305 18996469 ~ 19023292 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding upstream 139920 18761647 ~ 18941677 (+)
si:ch211-158d24.4 NA coding upstream 352461 18725783 ~ 18729136 (+)
arpc5la arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248 coding upstream 402771 18675319 ~ 18678826 (+)
LOC122350979 LOC107728433,LOC107676613 coding upstream 409368 18663946 ~ 18672229 (+)
LOC122350065 pold2,LOC107747204 coding downstream 10046 19100306 ~ 19103847 (+)
LOC122350746 pqbp1,LOC107702814,LOC107683912,LOC107747222 coding downstream 14793 19105053 ~ 19106870 (+)
LOC122349950 adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107550971,LOC107753091,LOC107703147 coding downstream 106190 19196450 ~ 19200081 (+)
slc7a4 slc7a4,LOC106579925 coding downstream 159461 19249721 ~ 19256112 (+)
sf3a1 sf3a1,LOC107550953,LOC107564451 coding downstream 171681 19261941 ~ 19267105 (+)
G64910 NA non-coding upstream 407253 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 463413 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 630233 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 690386 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 714487 18366570 ~ 18367110 (+)
G65108 NA non-coding downstream 93430 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 134309 19224569 ~ 19233384 (+)
G65119 NA non-coding downstream 315396 19405656 ~ 19482043 (+)
G65111 NA non-coding downstream 333759 19424019 ~ 19425722 (+)
G65267 NA non-coding downstream 467284 19557544 ~ 19558486 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 359351 18695454 ~ 18722246 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 481113 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 617050 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 657792 18418948 ~ 18423805 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 796636 18258220 ~ 18284961 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 4687 19094947 ~ 19096071 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 29684 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 109728 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 181832 19272092 ~ 19273770 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 939774 20030034 ~ 20033607 (+)

Expression


Co-expression Network