si:dkey-178e17.3 (LOC107754395,LOC107671045,LOC107657210,LOC107722861)


Basic Information

Item Value
gene id si:dkey-178e17.3
gene name LOC107754395,LOC107671045,LOC107657210,LOC107722861
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1837123 ~ 1852539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247946.1
CGTCACCCCGCGCGCGCCTCAGATGAAGTTGAGCGATGCTGCTGACGGGACGCGTCTGAAAGCGCTCGGATTCGCGAGAAACTCCCACAAAGCGTCGTCTCCCGTACCGAAGCGACCCCCGAGGACGTTCCGCGAGACGCCGTGATGAAGATGACGACGACGGTGGTAACGCCGGCTTTGACGCGCGTCTGCGCGGTGATCGCGCTCGTGATGTGCGCGTGCGGCGGGTGCGAGGCGGGATGCGCGGACAGACCGGCACCGAGATGCTGCCCGGGACGGAATAACGAGTGCGCGGAGAGGAGCGCGAGGAGGACCGTGTGTTACTGCGACGCGTACTGCCGGAGGAGCGGCGACTGCTGCGACGACTACCAGAGCGCGTGCCACGTCTCAGCAGCTATAGACTGTGAGGTCCGGCAGTGGGGCCCCTGGTCCCCGTGTTCATCCGTCTGTGGGGCAGGGACTACGGAGCGGAGCCGACAGGTAGCCACGCCCCCTCGCAACGGAGGCACGCCCTGCCCCGACCTCAAACAGCGGCGCGGGTGTCTCGCTCACACGGGCACCTGCAGTGCAGCTAAAGaGGTGGCCAAGATCCTGCCTGACTCATTCAAGCGGAACTTCAAGGACCCTTGGAGACGGCCGCACATGCTTATGAAGGAGGAAAAGAAGAGttACTGCGTGCAGATGCGTGTGAAGCAGGCGAGCGCTGCCTGTAAGGTCAAACCGTGGAGCGCCGGCCTGGTTCACGAGCGCTCTGTATGCGTCGAATGTCAGAGTGACGCCATGACGACCGATAACCGCTGCCGTGGCGACGGGCTGCAGAACATCAGAACCTTCTGGTCCGCCGCGTCCGCTCCGGGTTGCTCCGGCTCGTGGGTTCAAGAGTCCTTCACCAAGGACTGCCGGTGTCCATCTTACTCCATGATTTTCATCTGAACCAAAACACACTTTCAAGCTCCTTTCGAGGGACACGGTTGCTTAAAACGATGCATCTGAAGACAAACTCTCTCCATCAAAAGTTAAGCAATTTGTCACTATCCTGTGCCTCCACCGAAACCAGCACACAACCCTGTTCTTCTCAAGCTCTGCTGTCTACCTCCAAAATGCACCTGCACCCGTTTCTGATGCCTTAGATCATAGGTTTCGCTCTGTCCTGTTTTTCTACTCTTTTCTGATCCACACgtactgtatttatatacgTTTGAATGtactcctgtgtgtgtgtgtgtgtgtgtgtaacgttTGCACGTGCTGCGTGTGTTTTGAATGCAAAACCCGTCGCTGAAAGACAAGCTAATGTATATGAATGTTTCGTTTTCTGGAGGAAACCCCTTCTTTTGTTTATTCTCACGTGTCCTGATCTGTGCAAaacgctgcagtgccttacgctttCGCTCGTTTTCCCAAAGTTGCTTCGTTCATGTCGGTTTGCACGATTTGAAGGCTGCGTTCGAAAGCGCGCTCGATCCGTGCGTATCCATTTCGCGTGAAAGCAAAGCGCCCCAAACCGTGGCCAACCACAAACTTGTCCACAACAACGTAAAACCTTTCTCATTGCTGCTCGTCTCAATTGCCCAATgcccaatttatttattatttacagcatCTCTGACTCTTAATACATGATGACTTCCGTGCACACACATAGCAAACCATCAGGACTGCACCAAATATTTTCTAGATTGCAacttcattgtatttttgtctttaagtaacatttcaattgcttttgtatgatttttttttttttgttgccttgTTATTTGCATCCATCACGCATTAAACGGTCATCGTCTCGATGACTTTTCTTTGACTGCTGGCTCTCGGTGTGATCGTGACGCTCTCGCCGCTGTGAGGTGTCTTCAGTCGTAGCGTGTGTTTAGCGTGCATGTGCTCATTACGCATCAAAGGGCTCGTCTCGTTTACACGCACCCGTCTGCACACTACATATATTTTCAGGCATTTTTTGCATGCTTGCTCGGCAGCGTGCTAAGTGCAGTATACTTAAAATTCAGGTGATCGTGTGCTAATGTTGGGTTTGTAGGATGGAATGCGTAAACACGCTTTAAACAGCACTGCTTTACACTTCTGCTTCAATGCATTAAACGACTTTTTGTAAAACTAACCAAAAATGTCAATGTATGAATATCTTTACCACTTATACTTGCATTATGTACTATATAGTGTCTTGAAAACGTAAAAATAGCGCAATCCTATGCGCAATGAACCACGTACCACTTTTACTGTAACTAAGATAGTTTtagtaaaccaaaaaaaatgccAATGTATGGATGtctttgcaaatatattttatatacacacgcacacgcaccactgtatgttttgttttcgtccgaagtacagcaaaaacagaaatgtgaaatatctgtaaaacctgaatacgttttta
>XM_043247947.1
ACCCCGCGCGCGCCTCAGATGAAGTTGAGCGATGCTGCTGACGGGACGCGTCTGAAAGCGCTCGGATTCGCGAGAAACTCCCACAAAGCGTCGTCTCCCGTACCGAAGCGACCCCCGAGGACGTTCCGCGAGACGCCGTGATGAAGATGACGACGACGGTGGTAACGCCGGCTTTGACGCGCGTCTGCGCGGTGATCGCGCTCGTGATGTGCGCGTGCGGCGGGTGCGAGGCGGGATGCGCGGACAGACCGGCACCGAGATGCTGCCCGGGACGGAATAACGAGTGCGCGGAGAGGAGCGCGAGGAGGACCGTGTGTTACTGCGACGCGTACTGCCGGAGGAGCGGCGACTGCTGCGACGACTACCAGAGCGCGTGCCACGTCTCAGCTATAGACTGTGAGGTCCGGCAGTGGGGCCCCTGGTCCCCGTGTTCATCCGTCTGTGGGGCAGGGACTACGGAGCGGAGCCGACAGGTAGCCACGCCCCCTCGCAACGGAGGCACGCCCTGCCCCGACCTCAAACAGCGGCGCGGGTGTCTCGCTCACACGGGCACCTGCAGTGCAGCTAAAGaGGTGGCCAAGATCCTGCCTGACTCATTCAAGCGGAACTTCAAGGACCCTTGGAGACGGCCGCACATGCTTATGAAGGAGGAAAAGAAGAGttACTGCGTGCAGATGCGTGTGAAGCAGGCGAGCGCTGCCTGTAAGGTCAAACCGTGGAGCGCCGGCCTGGTTCACGAGCGCTCTGTATGCGTCGAATGTCAGAGTGACGCCATGACGACCGATAACCGCTGCCGTGGCGACGGGCTGCAGAACATCAGAACCTTCTGGTCCGCCGCGTCCGCTCCGGGTTGCTCCGGCTCGTGGGTTCAAGAGTCCTTCACCAAGGACTGCCGGTGTCCATCTTACTCCATGATTTTCATCTGAACCAAAACACACTTTCAAGCTCCTTTCGAGGGACACGGTTGCTTAAAACGATGCATCTGAAGACAAACTCTCTCCATCAAAAGTTAAGCAATTTGTCACTATCCTGTGCCTCCACCGAAACCAGCACACAACCCTGTTCTTCTCAAGCTCTGCTGTCTACCTCCAAAATGCACCTGCACCCGTTTCTGATGCCTTAGATCATAGGTTTCGCTCTGTCCTGTTTTTCTACTCTTTTCTGATCCACACgtactgtatttatatacgTTTGAATGtactcctgtgtgtgtgtgtgtgtgtgtgtaacgttTGCACGTGCTGCGTGTGTTTTGAATGCAAAACCCGTCGCTGAAAGACAAGCTAATGTATATGAATGTTTCGTTTTCTGGAGGAAACCCCTTCTTTTGTTTATTCTCACGTGTCCTGATCTGTGCAAaacgctgcagtgccttacgctttCGCTCGTTTTCCCAAAGTTGCTTCGTTCATGTCGGTTTGCACGATTTGAAGGCTGCGTTCGAAAGCGCGCTCGATCCGTGCGTATCCATTTCGCGTGAAAGCAAAGCGCCCCAAACCGTGGCCAACCACAAACTTGTCCACAACAACGTAAAACCTTTCTCATTGCTGCTCGTCTCAATTGCCCAATgcccaatttatttattatttacagcatCTCTGACTCTTAATACATGATGACTTCCGTGCACACACATAGCAAACCATCAGGACTGCACCAAATATTTTCTAGATTGCAacttcattgtatttttgtctttaagtaacatttcaattgcttttgtatgatttttttttttttgttgccttgTTATTTGCATCCATCACGCATTAAACGGTCATCGTCTCGATGACTTTTCTTTGACTGCTGGCTCTCGGTGTGATCGTGACGCTCTCGCCGCTGTGAGGTGTCTTCAGTCGTAGCGTGTGTTTAGCGTGCATGTGCTCATTACGCATCAAAGGGCTCGTCTCGTTTACACGCACCCGTCTGCACACTACATATATTTTCAGGCATTTTTTGCATGCTTGCTCGGCAGCGTGCTAAGTGCAGTATACTTAAAATTCAGGTGATCGTGTGCTAATGTTGGGTTTGTAGGATGGAATGCGTAAACACGCTTTAAACAGCACTGCTTTACACTTCTGCTTCAATGCATTAAACGACTTTTTGTAAAACTAACCAAAAATGTCAATGTATGAATATCTTTACCACTTATACTTGCATTATGTACTATATAGTGTCTTGAAAACGTAAAAATAGCGCAATCCTATGCGCAATGAACCACGTACCACTTTTACTGTAACTAAGATAGTTTtagtaaaccaaaaaaaatgccAATGTATGGATGtctttgcaaatatattttatatacacacgcacacgcaccactgtatgttttgttttcgtccgaagtacagcaaaaacagaaatgtgaaatatctgtaaaacctgaatacgttt

Function

NR:

description
PREDICTED: somatomedin-B and thrombospondin type-1 domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247946.1 True 2407 mRNA 0.50 5 1837123 1852539
XM_043247947.1 False 2397 mRNA 0.50 5 1837126 1852535

Neighbor

gene id symbol gene type direction distance location
LOC122350661 NA coding downstream 59649 1771982 ~ 1777474 (-)
LOC122349997 NA coding downstream 122902 1710358 ~ 1714221 (-)
LOC122350659 NA coding downstream 190761 1627653 ~ 1646362 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 313659 1494505 ~ 1523464 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding downstream 382593 1447000 ~ 1454530 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding upstream 5381 1857920 ~ 1878899 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding upstream 28199 1880738 ~ 1926722 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding upstream 75190 1927729 ~ 1936872 (-)
plat plat,LOC107754398,LOC107657211,LOC107671043 coding upstream 94602 1947141 ~ 1965053 (-)
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding upstream 144011 1996550 ~ 2008100 (-)
G60204 NA non-coding downstream 56770 1726225 ~ 1780353 (-)
LOC122349999 NA non-coding downstream 71580 1717401 ~ 1765543 (-)
G60207 NA non-coding downstream 142303 1674474 ~ 1694820 (-)
G60214 NA non-coding downstream 153083 1673516 ~ 1684040 (-)
G60209 NA non-coding downstream 165357 1661489 ~ 1671766 (-)
G60471 NA non-coding upstream 135234 1987773 ~ 1988553 (-)
G60473 NA non-coding upstream 138796 1991335 ~ 1994745 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 185161 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 271519 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 314393 2166932 ~ 2168247 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 15473 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 74574 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 230514 1561546 ~ 1606609 (-)
G60220 NA other downstream 256507 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 480170 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 206855 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 278830 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 608392 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 668675 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 930081 2782620 ~ 2823826 (-)

Expression


Co-expression Network