snap29 (snap29,LOC107722859,LOC107560055,LOC107726963)


Basic Information

Item Value
gene id snap29
gene name snap29,LOC107722859,LOC107560055,LOC107726963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1822636 ~ 1827411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247948.1
ATCTAAACAAAGCgtcataaaacaataacatcatcaAGTGAAGATGGAGAGAGGAGGAGCCTGTCTGACGTCACGCCGACGCACACCGGAAGTTGTTTCGGCGTAAGAGTCAGCTGATAGCAGGAGAAACACATCAGCCTCCAGCGATCAAAGCACAGGATGTCTGCCTACCCTAAATCCCACAATCCTTTCGCCGACGACGATGATGAAGAGGACTCGAAACCCCGAGGAGGCTTCAACTTCGACGACGATCCGGAGGAGAGCTCCCTGAGCCCCGCGGAGCGACGCCAGAGACAGCTGCAGCAGGAAGTGATGCGCACCGCGCGGTCGGCCGTGGACAGCAGCCACCGCTCGCTCGGACTCGTCTACGAATCAGAGAAGGTCGGAGCGGAGACGGCGGAGGAACTGATTCGTCAGGGCGAGGCTTTGAAGAGGACGGAAAAGATGATCGACAACATGGAGCAGGACATGAGGACGAGCCAGAGGCATATCAACACCATTAAGAGCGTCTGGGGCGGCATGGTCAACTATTTCAAAGGCAAACCTGAACCTCCCAAACCTGCTCAGAAGGACCAGCCCGTCTCCTACGAGGCCAACAGCAGGTTACAGAATGCGCTCACGGAGAGCAAGCAGCAGGAAGACAAATATCAAGCCAGTCATCCCAACCTCAGGAAACTGGACACATCTgGATTCGGAGCGTCCGCTTCGCTGGAGAACGACCCGTCCGATCAGAACGGCTATCCCAAGAACAAACACCTACGGGCCGCCCATCAGCAGCTGGACACGAACCTCGACGAAATGTCTCTGGGTTTGGGTCGCCTGAAGAACCTGGGCCTGGGGCTGCAGGCCGAGATCGACGACCAGGACGTTTCTCTGGACGCTTTGCTCAACAAGGTGGACACCATGGACGGCAAGATCGGCTCCACCAACCGGCAGCTCAAAAACCTCAAATAGACCCTCCCCCCGgggtgatgtcatttcctggaGGCGTGGCCAAAACATCTCTGGCTCTCTGAAAAGATTAGTCGACCCACTGAGAAGTTAAGCGCTCGTTTCAGTTCGGCCTTCGTTTAATCGTCACTTATTCGAGATGGATTGTACATAAGCTCAGAAACGAACACGTTACCCGTAAGAAAAGCATGCTCGAGACATTTCAGTCAGTGCTTTTCCCGATTCACCAGATACCTTGGTTATTACACAACCGTAATACGACCTAGTTTAGAAAAGACACTTTCATAACGGCGTGTCCTAATTTTCCGTTGATGTTTGTATCAGAAACCTGTTGAGTTGCCTTAAAGTTCACCGATTTCAGACGTGGAGCGATTCTCGCTGCATTTCACCGCGCTTCATAGACGAGTCGTGTCCACTAACCTGAGGATGAATGGGGCTTTTACTCGTTTTCTTCTTTTCCGGGTATATATGAGAGTGGCTTTGTATGAAACACCAGAACATGCGTGAGCGTTTCACTATTGTTTCTGCGTCTGTAAATCAAACGTTGTACTCCTGTTAAAGCTGAATGTGAACATGAATAAAACCTTTTCATCGA
>XM_043247949.1
ATGGAGAGAGGAGGAGCCTGTCTGACGTCACGCCGACGCACACCGGAAGTTGTTTCGGCGTAAGAGTCAGCTGATAGCAGGAGAAACACATCAGCCTCCAGCGATCAAAGGATGTCTGCCTACCCTAAATCCCACAATCCTTTCGCCGACGACGATGATGAAGAGGACTCGAAACCCCGAGGAGGCTTCAACTTCGACGACGATCCGGAGGAGAGCTCCCTGAGCCCCGCGGAGCGACGCCAGAGACAGCTGCAGCAGGAAGTGATGCGCACCGCGCGGTCGGCCGTGGACAGCAGCCACCGCTCGCTCGGACTCGTCTACGAATCAGAGAAGGTCGGAGCGGAGACGGCGGAGGAACTGATTCGTCAGGGCGAGGCTTTGAAGAGGACGGAAAAGATGATCGACAACATGGAGCAGGACATGAGGACGAGCCAGAGGCATATCAACACCATTAAGAGCGTCTGGGGCGGCATGGTCAACTATTTCAAAGGCAAACCTGAACCTCCCAAACCTGCTCAGAAGGACCAGCCCGTCTCCTACGAGGCCAACAGCAGGTTACAGAATGCGCTCACGGAGAGCAAGCAGCAGGAAGACAAATATCAAGCCAGTCATCCCAACCTCAGGAAACTGGACACATCTgGATTCGGAGCGTCCGCTTCGCTGGAGAACGACCCGTCCGATCAGAACGGCTATCCCAAGAACAAACACCTACGGGCCGCCCATCAGCAGCTGGACACGAACCTCGACGAAATGTCTCTGGGTTTGGGTCGCCTGAAGAACCTGGGCCTGGGGCTGCAGGCCGAGATCGACGACCAGGACGTTTCTCTGGACGCTTTGCTCAACAAGGTGGACACCATGGACGGCAAGATCGGCTCCACCAACCGGCAGCTCAAAAACCTCAAATAGACCCTCCCCCCGgggtgatgtcatttcctggaGGCGTGGCCAAAACATCTCTGGCTCTCTGAAAAGATTAGTCGACCCACTGAGAAGTTAAGCGCTCGTTTCAGTTCGGCCTTCGTTTAATCGTCACTTATTCGAGATGGATTGTACATAAGCTCAGAAACGAACACGTTACCCGTAAGAAAAGCATGCTCGAGACATTTCAGTCAGTGCTTTTCCCGATTCACCAGATACCTTGGTTATTACACAACCGTAATACGACCTAGTTTAGAAAAGACACTTTCATAACGGCGTGTCCTAATTTTCCGTTGATGTTTGTATCAGAAACCTGTTGAGTTGCCTTAAAGTTCACCGATTTCAGACGTGGAGCGATTCTCGCTGCATTTCACCGCGCTTCATAGACGAGTCGTGTCCACTAACCTGAGGATGAATGGGGCTTTTACTCGTTTTCTTCTTTTCCGGGTATATATGAGAGTGGCTTTGTATGAAACACCAGAACATGCGTGAGCGTTTCACTATTGTTTCTGCGTCTGTAAATCAAACGTTGTACTCCTGTTAAAGCTGAATGTGAACATGAATAAAACCTTTTCATCGA

Function

symbol description
snap29 Predicted to enable SNAP receptor activity and syntaxin binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; pronephros morphogenesis; and regulation of neuron projection development. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).

NR:

description
synaptosomal-associated protein 29

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process

KEGG:

id description
K08509 SNAP29; synaptosomal-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247948.1 True 1546 mRNA 0.52 6 1822636 1827411
XM_043247949.1 False 1498 mRNA 0.52 6 1822679 1827411

Neighbor

gene id symbol gene type direction distance location
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding upstream 15234 1802695 ~ 1807402 (+)
LOC122350660 NA coding upstream 173018 1648478 ~ 1649618 (+)
LOC122351062 NA coding upstream 262269 1559120 ~ 1560367 (+)
LOC122350265 rasal1 coding upstream 341082 1456231 ~ 1481554 (+)
spats2 LOC107749411,LOC107701385,LOC107573793,LOC107661167,LOC107572966,LOC107728257 coding upstream 556402 1253631 ~ 1266234 (+)
LOC122350512 NA coding downstream 109350 1936761 ~ 1946949 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding downstream 139172 1966583 ~ 1995859 (+)
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding downstream 178673 2006084 ~ 2014684 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding downstream 227920 2055331 ~ 2058725 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding downstream 234130 2061541 ~ 2069288 (+)
G59982 NA non-coding upstream 20550 1800305 ~ 1802086 (+)
G59969 NA non-coding upstream 40099 1729067 ~ 1782537 (+)
G59968 NA non-coding upstream 44150 1724561 ~ 1778486 (+)
G59966 NA non-coding upstream 103537 1711907 ~ 1719099 (+)
LOC122349901 NA non-coding upstream 120440 1701712 ~ 1702196 (+)
G60248 NA non-coding downstream 57837 1885248 ~ 1886439 (+)
G60258 NA non-coding downstream 81117 1908528 ~ 1911167 (+)
G60265 NA non-coding downstream 119737 1947148 ~ 1950296 (+)
G60269 NA non-coding downstream 125382 1952793 ~ 1953126 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding downstream 139709 1967120 ~ 1999468 (+)
pggt1b pggt1b other upstream 603832 1210815 ~ 1218804 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 970632 842077 ~ 852004 (+)
G59807 NA other upstream 1017797 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 1271949 537775 ~ 550687 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 88049 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 187448 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 203413 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 210288 2037699 ~ 2039836 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 2021203 3848614 ~ 3850557 (+)

Expression


Co-expression Network