LOC122351116 (ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627)


Basic Information

Item Value
gene id LOC122351116
gene name ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 918543 ~ 923208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248001.1
ACGCGCGCGGGGGGCGGGGCGTCACACAGGAAGACGCGGCTTCTCTTCAGTCTCCTCCTCGCCtcgcgtcgcgtcgcgtccGTGTTCAGAGATGCAGCGACTTCGGCTCTGGCGCGCGCTGCCGCTCCTCTTCCTGCCGTTTCTGGGAAGCGCCGTTGATTTCAAGACGCGGACGGGACCGCGCGTGACGGACAAGGTGTTTTTTGACATCACCGTCGGAGGACACGAGGTGGGCCGGGTCGTGATCGGTCTGTTTGGAGAGGTCACTCCGCTGAGCGCGCAGAACTTCGTGGCTCTGGCCACAGGAGAGAAGGGCTACGGGTACAAAGGCAGCAAGTTCCATCGAGTCATCAAGGACTTCATGATCCAGGGAGGAGACTTCACGGCCGGGGACGGGACCGGAGGTAAAAGCATCTACGGAAGCACGTTTGCAGACGAGAACTTCAGGCTGAAGCATCTGGGAGCAGGCTGGGTCAGTATGGCCAACGCCGGACCGGACACCAACGGGTCGCAGTTCTTCATCACGCTAGCCAGAGCGCCGTGGCTGGACGGGAAACACGTGGTGTTCGGAAAAGTCTTGGAGGGGATGTCTGTGGTTCACACCGTGGAGCTCCAGGACACGAACGAGAGGAACCTGCCCTACACCGAGTGTGTGATCGTGAACAGCGGCCAGATCCAGCTCAAAGAGCCCTTCGTGGTGGAGGTGGAGGGATGGTGAACCTCTTCGTCTCGTTCTTCTCTTACTATGCAGACACCACTCTATCTGTCCACTCTGAAACAAAGTCACCCGGCAACATTTCATAATCTCCTCCAGTCATCTTAATATTACAGTATAGCTACTTTAGAAGTTTATTACAACTAAGAACAAGACAGATCTACGAttaagattaaatatataacgttCACAGCCATTAACTGAACATTCGTGTAAGACGTGACGAGATCTAACCAGACCTTACAGGAAGATAAATGGGATGGCGATCGTTTTGTTTTCATCAGAGTGGGTTCTGAAAATCATATTCCGCTGATTTAGACTCGTTTCATGGAGAACTAGATATGAATATTCACTGCGCCTCACCACGATAAACCAACAACTTGAGAAAACACTCAAATAAAGATGATTTAAGATGATTGACTCCTGTCTGGAGCGGGCTTCATCAACTCAGTGTAAGGAAAAGCTCAACATCAGCATCTTTTCCAGCATGGCtcacagatgtgtgtgttttaacactaatctctcacacacacacacacacacacacacacacacacacacacacacacacacacacctctctgtCCTCTGAGTGccagaagacacacacacttcgacactattttaattgtgatgtaGAAACACGAGTAATCTATTAGAACAAtctgtcttttgttttaaaagaaactatgtaaatattaattcatatttataaactaattcaatcatttcacagcatttaATGATCAGTTATACAGTCAAACCACAGCTATTCAGAGAGCACACATAGTTTAGTTCATTAACTTCTGAACTCTTACCGTGGGCTAGCggtgaaataaaacactgctttttctttacttctaatatttgatttgattcaacTATTCAACACAAGTCATTACTTCTCTTTCTATCAAAGTTTGATATTGTCTAGATGAACTTGTTCTCTTTTATATAAACTAATAACTGGCATGTAAGGTCTTCATCTCAGTTCTAGCTTCACCGTCTGCTCTGTGATCTGTAAAATCAGCATGATTATTAGATCTCTGTATCGTGATGTACTTCAGATATTCAACACATTTCATTCTTAATAGAAGTAGAAGCATGAATTAGACGTAGAGTCGGGTTTGATGATCAATAATGCTGCggtctgaaaataaaatacttccTTCTGAA

Function

symbol description
ppic Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within protein folding and protein peptidyl-prolyl isomerization.

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase C-like isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09563 PPIC, CYPC; peptidyl-prolyl isomerase C (cyclophilin C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248001.1 True 1891 mRNA 0.46 5 918543 923208

Neighbor

gene id symbol gene type direction distance location
LOC122351049 cep120,zgc:163014,LOC107726217,LOC107712640,LOC107694735 coding upstream 41596 853071 ~ 876947 (+)
LOC122350421 slc12a2,LOC107697601,LOC107712558,LOC108442001,LOC108265961,LOC107573338,LOC105890695,LOC107726215 coding upstream 76611 822359 ~ 841932 (+)
LOC122350422 NA coding upstream 97858 810039 ~ 820685 (+)
LOC122350088 NA coding upstream 116798 789181 ~ 801745 (+)
zgc:101664 NA coding upstream 129885 786439 ~ 788658 (+)
hsd17b4 hsd17b4 coding downstream 82351 1005559 ~ 1016565 (+)
sema6a LOC107661172,LOC107663594 coding downstream 146633 1069841 ~ 1129502 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding downstream 247441 1170649 ~ 1178671 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding downstream 262561 1185769 ~ 1187485 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding downstream 265140 1188348 ~ 1199937 (+)
G59815 NA non-coding upstream 44344 873888 ~ 874199 (+)
G59801 NA non-coding upstream 151915 755335 ~ 766628 (+)
G59762 NA non-coding upstream 191538 626849 ~ 727005 (+)
G59756 NA non-coding upstream 273975 567295 ~ 644568 (+)
G59811 NA non-coding downstream 24469 947677 ~ 950973 (+)
G59825 NA non-coding downstream 34015 957223 ~ 958231 (+)
G59824 NA non-coding downstream 35471 958679 ~ 960171 (+)
G59814 NA non-coding downstream 50278 973486 ~ 976706 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding downstream 97984 1021192 ~ 1022914 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 66539 842077 ~ 852004 (+)
G59807 NA other upstream 113704 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 367856 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 287607 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 992252 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 1091651 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 1107616 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 1114491 2037699 ~ 2039836 (+)

Expression


Co-expression Network