LOC122349935


Basic Information

Item Value
gene id LOC122349935
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19708097 ~ 19744650 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251540.1
CCACATGGTACGTGTGGGCCACAGCGGGAGCCACCAGGCCACACGACAGAATCCAGATCCCAGAGAGAAGATACGTGCAGGCCAGAACTGAGATGCGCTTCTTCAGGGGGTGGACCGTGGCGTAGTATCTGGAAGACCTCGCCTCCATCCGATCAAGTCTACATGAATGGGTCTGCATCCAAACCCCACGATAATATCAAGGGCTTTTAAAGACAGTATTCATGTAGTCTTCATCACGTGTAAAAGCACAGAAGATGAACCACCAGACGATGTGCAGGAGATGATGGCCCAGTCTGCGCATAACCCTTCACTGTAAGTTCTTTCAAGATCTCACAGACGATTGGATATACCGAACGAATACACACATGTCGTTCATGAACAAATGAGGACAGTCATTTGGGTATTATCCTGCACTGACGGCAGAAGGAGTATTCTgacggttttcatccaaaatatcttaaatcgtgttctgaagacaaacaaggCTTTCCGGGTCTGGAACGACATGTAGGTAAGtacttaatgacaaaatgttcagtttttggtggagtaaccctttaagacaGTGATGAATAGTAGCGGTAGAAGACTTGTTAATACCCTAGAGCTAAACAATTAGGGCTTGATATTTTGTTCCCGATACTTAATATGAGAGATAGAGATAGGAAAACTCAAAGTCTAACATTTTAGCACTAACTTCAGTTTGTTAATTGAAGATGCAGTAACATAAATCAGTCTAGATTACGACTGCACGAACCGGCTCGTTTCAAAGGTGGTAATAAAGCCGATGGGCCCTCATTAGGGGCCGGCTGTGATGCTAATAAAAGCACACGTGCCGTAATGTCAGTTTCATGTGATGTAAGTTGACTTCCCGGCGTATAGTTGATATTTCCTCCTCACAGAGCTGCAGGTGTTATCACGAGGGCGTTCGCTCTCTACGTTTCTGCAAGCTTCTGTTTGAATAGGACAATCAAACCTGGTTAGCCTTAGGTTAGGTGGTGCAAGGGAACAATAATAGCTTTGAATGTATTTTCActatgagctttttttttgcttagatTTTAAAGTTCACAAATTGTCGCGGGCCTCATTCGGTTAGCCCAGAGAGATGCGATACTCTCTGTATTCTGTCTGCGCTTTCGCGTACCTGGAGGTGAGGGGTTGAGCCGGGGCAAATCTCTAATGGGTTCGCACTATGACAGTCATTAATTTTCTTCATTGTTAACCATGTCAACGAGCACCTGTGAAATGGAAGCGCAGGGGCATAATACATCCCCTCTCAGCCTGTATTATCAGATACACGGAGCCGCTAGCGCTCCTCTAATTACAGGACGcacagaaagagggagagaatgTGGGTGAGACGGGAAAATCAGAAGCTGTTATGACTCACCTCGCTATCGTTTAggtttttatctgaaataagaAGAGAACAGTCAgagatgaggaaaaaaagacatgtcGAAttacatatattcattttatttttataaacactaCCATACATATtgaaaagtctttatttttatattaaatactaaaaattaaacGTTATGAAGTCCAACGAGAAAAGTTAAGTCCTTCAGGTGACTGGGGGTAAGGTAATTATAGCCCTGGAAAATACCAGTTTTTACtaatcttttaaaagttttcctttctctttggggtGTTACAAGCTGCGTAGGTAAGATCCCTAAAGCTGGAAAGACTGAAGTTTCAAAAGCACGGAGatgttatttataaaagttGTCCGCACCCCCCTGAAACGACTCGTTTTAAACAGGCCGCATCACAGAGTGGCTTTATTTTCATAAGACCGcgaagaaagaaggcggagctataaTTCTCGCTGTAGCGTCGCTGCATCACTGATAAAAACGTTTCGcttgatttacttaaaaaatattatgattttttttttgcataattatataTCGTAGTTGAAACAAGACTAGTCTTTGTACAAACTACATAATTTTACggtttgttgaaataaaatttgcacataaagttaacttaattttagcatttctctaatcattttttttgtgtgtgtgatctacGTGACCTTAATagctttaaatgtgtatttttgattgattccaatgaaacttttacatttccacATTGCACATTTCAAGCTAGATCTACTCCAATTTTCTAATTAGTAACAGAGTATTCTATTAAAAGTATGAAAGTAAATAGTTTATTTACTATTTCACCATTGGTACTTCAATGGAATACCAGTAAAATGtactcaaatattaaaattttgttaacataaactgacattttgGCCATCTCAAAGTGAATCTGGgtctgtataaaaataatacacattaagACACTAAAGGAAAGCTCATTAAGTGAAGGTtgacatgctttattttctcaattttagGAATATACTTAAAACATTTCCCCTTAATTCACTTGATACATCACAAGAAATGCATGCCGTGGCCATCTACATGGACATCTGTCTCAACGTACTGTACCAATTAAATTACTTTCTGTAAGGACTTTCTTTAAatgacattgtatttttaatacaaaacagtgacaaaacattttcacagtaacATGTTCTAAAACAGCAAGCTCACAAACAATCATCGTGTGAAAATGGAGcagaagttctttaaaaaaaaaaatcgaagtTTCAGTTACTTTGGGTTTCTACTGAAATTTACATTGTGCAAAATTGTCTTCATTTAAAGCttcactttaaatgcatcagaaaCATCATGCATTGTAAACATAACAGACTCACAAAGTGCATAAGAGAACTTGAGaaattgtaaactgtaaaacttcACCAGAACTTAAACCTTCTAGATTAAACAATAGCTTATAGGCCAGAAAGCTGACTTTAAGGTTATGGACTTTGGGCAGACTTTTTTGATTTCCAAAAAAAGCCTGTGTGTCAGTTTTTTGGGGTAGCTTAGTGTTATAACAAAAAGATATAAGTTCACATTGGGCAAAATTTTTTCAGTGAGTCACGCGTTTCTCACTTCTTCACagtcaacaaaaacaacaacaacaacaacaacaacaaaaaacaacaacaacaacaactcacAAACATGGTCCCCATATGAAAATGTAGTAGTGCAACATGAAAAAGTGCATAAGAGAACCTAAGAGATTGAACTCTAAAACTTTACCAGAGGAACTCAAAAGCCTTTCCTCAAACCTTTCACAATATCAGGCAGGCGTcgtgttctggagacgctgtgtgcTGTTGTATAAGTGAAACTAATTTGTTTGCgtttccaaaagaggacacagcTAGAAATCAGGggttaagttgtgtttacaacacggttccagaacagttcgacacaaatattagagtcagcctggcgcttctgactcacaaccttttaAGCAAGTTaggttttcttattaaaagaacctgctacttactattcaaacacGAGTTCTGAGCAGCGTAGAGGAATGCTTGTTGTTTGTTGCTTCTCCGATCACGAATACAGACAACTGCATTATGTTTACGCGGCACAATACAACGCGATACATAAAAAGTcatgataattaataattatgtctccactggatgcaacaaatgcctcgtttgtaaaggcttttattgtttttgtatcagCCGTACATTATTGTTctgcttagaggagaaacaataatgtacagtatgtggaaaataatgtgaatCAAAGTCAGAACtattatatgtgaccctggaccacaaaactagtcaGAGGTGtcttctgaaagctgaataaataagattttgaTGTGTGGTTGTTATGATAGGATAATATTTGGTTGAGATACAACCATTtgaaaatttagaaaaaaaaaaagaaaagaaaaagatagtaaaataaataaatgtaaaaatactgagaaaatcacctttaaagttgtccaaatgaagtgcTTATTACCAATCGATGCATAATACTAATTAAgtattcagttttaatataattacggtatgaaatgtgcaaaatatcttcatggaacatgatgtttacttaataattttggggcaaaaaagaaaaaatgtatttttggctattgctacaaatacacctcggtaacttaagactggttttgtggtccaaggtctCACGTATTATCCTGTTATATATTATTCTGTAttgttctattttaaaataaagcacaaagaTCTCA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251540.1 True 4179 lncRNA 0.37 4 19708097 19744650

Neighbor

gene id symbol gene type direction distance location
eif2d eif2d coding downstream 141341 19560831 ~ 19566756 (-)
slc12a5b slc12a5b,LOC107550951,LOC107747216,LOC107683884,LOC107702850,LOC107725712 coding downstream 164066 19499557 ~ 19544031 (-)
rh50 rh50,LOC107724755,LOC107570510,LOC107702833,LOC107683883,LOC107550951,LOC107747214 coding downstream 208689 19494137 ~ 19499408 (-)
rbm39b rbm39b,LOC107683885,LOC107747212,LOC107550952,LOC107570509,LOC107725799 coding downstream 215598 19481267 ~ 19492499 (-)
zgc:162200 zgc:162200,LOC107683887,LOC107702829,LOC107747207,LOC107724826,LOC107570514,LOC107550908 coding downstream 258356 19434029 ~ 19449741 (-)
rab11fip1a rab11fip1,rab11fip1a,LOC107740979,LOC107565115,LOC107724309 coding upstream 6189 19750839 ~ 19770144 (-)
adgra2 adgra2,LOC107683879,LOC107702827,LOC107724218,LOC107740993 coding upstream 26129 19770779 ~ 19829027 (-)
pdlim2 pdlim2,LOC107740981,LOC107724143,LOC107702839,LOC107683893,LOC103022934,LOC108265771 coding upstream 93612 19838262 ~ 19889578 (-)
sorbs3 LOC107683878,LOC107565106,LOC107723884,LOC107548264,LOC107702851 coding upstream 146000 19890650 ~ 19933478 (-)
LOC122350116 LOC107683905,LOC107565118,LOC107740999,LOC107548257,LOC107726396,LOC107702843 coding upstream 189776 19934426 ~ 19939617 (-)
G65244 NA non-coding downstream 299057 19406755 ~ 19409040 (-)
G65201 NA non-coding downstream 439907 19100929 ~ 19268190 (-)
G65199 NA non-coding downstream 440992 19099533 ~ 19267105 (-)
G65217 sf3a1,LOC106585510 non-coding downstream 444792 19262737 ~ 19263305 (-)
G65180 NA non-coding downstream 451067 19086572 ~ 19257030 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding upstream 358687 20103337 ~ 20104000 (-)
LOC122350956 NA non-coding upstream 391953 20136603 ~ 20140200 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding upstream 421406 20166056 ~ 20166372 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding upstream 536932 20281582 ~ 20284840 (-)
G65682 NA non-coding upstream 719901 20464551 ~ 20464756 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 274806 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 505720 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 660128 19023713 ~ 19047969 (-)
G65033 NA other downstream 1147763 18559667 ~ 18560334 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other downstream 1306159 18390663 ~ 18401938 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other upstream 373357 20118007 ~ 20134345 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 670415 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 974290 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 1270343 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 2026818 21771468 ~ 21776620 (-)

Expression


Co-expression Network