LOC122350073


Basic Information

Item Value
gene id LOC122350073
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1650920 ~ 1655010 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251559.1
tctcaacaaaaGATAGTGCTTAGTTTTGATATAGCCTTCCAATAATGTTCTAAGCATTTTGTGCATACAGTACTTCAGTTACGGCCCTCTGCTCTTTATTTATTGACCTTTTTCACATTGAGGTACATTCAATCTCAGTCAAAGCACCATATAGTCTCTGATGGCAGTTTCAGGACATCAGTCTCAGACTGGTTCCCCTACCTTCACTACATCTAAGCTCCATCCTAGCAAATGCATAACCTCACCACTAACTAACCTAAGCCCTCCCTGTCTTGTTCtgtttccttgtgttttattttcttctgtattcACAAACAGACCTGTAGAGCACGTGTACTGAATGAGTCACAGTGTGCTTGTCTTTAATTCTGTACAGGTGTGTCTCATTGATAAACCTGTTCTACAAGGCTGTTTATGAATTTCTAAGATATCATTCTGTTTACTCTAGTTATACCatcaaccttttatttttacccaTTTGCCTTCTCCAATTCTTCCATCATAGAAAGGACCAGAATTTTAGGCCTTTATCAGGGGTATTgctgttttgctattttatgcaaatgaaagcAAGTCTGTAGGAGATTGATTTAGTCTTTACAATAACATCCATACATATCCTACAccacgttttaaaatgttttatgtaagttTTGATTCCCTTTTCCAAccaatacacacataaacatccaCATAAACTCAactgaatataaaaatcaaaatagAGCAATCAACATTAACAAAACGCCCTGAAGCTATAGTGCTGGACATCGATTATAAATCAGGAACACCAATGCAGAGGTTGGATCAGCTCTCTTACAgcatcatgtgtgtgtttgatgcacaataaaaacactcatctgtgtgtgttttccctcTCAGCGCTGCCAAAGCACTGAATCTGGCCAAATTCAAGGTGAAAAGCTGTGGAGTGAGTGAACTGGAGAAAGAGggtatgtgaaatattacagcttttaCATATTCTGTAATTCCTGAAGAAAATAGCAGTCCTtgacagaataaagaaaaatacattcttaTGATTTAGactcagaattatttttttccctcgcaattaatgatatatgatataggTGATATATCTTACTctgagaattaaaatgaaaaatgttttaagaattttaaacgttcaaaattaatatattagttattattttcgTTTTCATTAGTGTTGTAACACCGAGTTTGGGTTCATgttcatgtcttttattttgtaatctgtttttctcttgttctctgCCTGGTGTGTGTGTCATGTTCTCACTGGTCCTCTTGTTTactgtgttctgattggttatGCTAGTAATCGTGTCATCTTCTGTTTGATATCAGATCTGCGACTTTTTATTGGATATTGTTTAACTTTCTCACACATTCTCAGATGGTATTGCTGGTATGAAAGGGAAGCAGTGCACAACTGCAAATGCTTTTATCTCTTTGTGATGGCTTTACAACTTAAATAGCGCACCACTTTAGCTGCTTGTGAGCGGAAATGAGCACGGAAGTGGGTGGAGACAAAGCCGACATATTGTAACCGCTTCAGTGTATTTAGTCATTACCATTTGATGAACAACGCAGGCTGACGTTTGATTATCTCCTCTCGTAGAATTTTCTAGAAACCTAATCTTTTTTACAGCAAGTCTACAGACGCAAAAGATATGCCATTACTAAACAGGTCTAGATCTGAACCAACCACCACCGAAAACTCGCCAGCTTGGATTTTGTCAAACATGCGGCAATGGATGAGTCCCGTGAGAGAGGTACTGAGGCCTGTTTCATTGGTGTTCCGGAGCATTGAGGCAGTCAACCAGATTTATACAGcctCAGTGACGGAGCACATTATTGATGGGAAGCTTCTCTAAGCCATCAGTCAGATGCGTCACAAAACCTCTTGAAGAGTATTAAACTGGAAGGATAGTAAGTAATCTCCATGATAAAGATGCTTTGCGATATTTGACTTACTCTTCTGTTCTGTGGGATTTGTTTTCTAGCTGATATCTTGCGAGCAGCTGgagcatttgtttgaaagatCATTGTTTCTTTCTCGGATCCAGCGAAGGATTTCTACATGCTGCCATTTGACTTCAACATCTCCCAGTCATTAAAAAGTACTAGAAACACTCAGTGCACAAACAAACTCAGACCATCACGTATCCCACCCAACCAAAACAGATCAGTTCAGATCAGATCAACATCCAAAAAAATCTGACAATACTGATACATTGCTCCAACAGCATTTGTAACAAATCACAGTTCACAACATACAAGCACAATATGACTCATTCAATATATGTGTGTCCCTTTATCATAAGTTATGCTATGAATTCCCCTAAGCTCCCAGGCTGTATAAAACATCCTCAGTCCAGCCCTGTTATACTAACCAGTGTTTAGTTCTTGAAACCTTCCCATAAGTACCTTTAGTAAGTTTGGctacatatgtatttttaagaacatGGAGACCTCTTGTGGCTGGATGAAGTTACTGCATCAAAACACTGCTCCTCCTGTAGTGTGCAGCTGTAAGTGAACACTGTAAGTAAAGAGATCACTTGCTCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251559.1 True 2580 lncRNA 0.38 2 1650920 1655010

Neighbor

gene id symbol gene type direction distance location
LOC122350659 NA coding downstream 4558 1627653 ~ 1646362 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 127456 1494505 ~ 1523464 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding downstream 196390 1447000 ~ 1454530 (-)
pym1 LOC107701384 coding downstream 398404 1250060 ~ 1252516 (-)
LOC122350094 NA coding downstream 402556 1244834 ~ 1248364 (-)
LOC122349997 NA coding upstream 55348 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 116972 1771982 ~ 1777474 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding upstream 182113 1837123 ~ 1852539 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding upstream 202910 1857920 ~ 1878899 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding upstream 225728 1880738 ~ 1926722 (-)
G60217 NA non-coding downstream 106791 1542446 ~ 1544129 (-)
G60199 NA non-coding downstream 136625 1457970 ~ 1514295 (-)
G60198 NA non-coding downstream 157760 1399728 ~ 1493160 (-)
G60194 NA non-coding downstream 176208 1384419 ~ 1474712 (-)
G60192 NA non-coding downstream 200990 1351967 ~ 1449930 (-)
LOC122350074 NA non-coding upstream 2728 1657738 ~ 1659992 (-)
G60209 NA non-coding upstream 6479 1661489 ~ 1671766 (-)
LOC122350072 NA non-coding upstream 9292 1664302 ~ 1666989 (-)
G60214 NA non-coding upstream 18506 1673516 ~ 1684040 (-)
G60207 NA non-coding upstream 19464 1674474 ~ 1694820 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 44311 1561546 ~ 1606609 (-)
G60220 NA other downstream 70304 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 293967 1349171 ~ 1356953 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 491634 1140698 ~ 1159286 (-)
G60098 NA other downstream 512768 1135401 ~ 1138152 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 77854 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 94052 1749062 ~ 1762549 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 404384 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 476359 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 805921 2460931 ~ 2464371 (-)

Expression


Co-expression Network