LOC122350789


Basic Information

Item Value
gene id LOC122350789
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22909647 ~ 22911382 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251621.1
TGGTGAGACCGTGCGTCCATCGCTCCATCCATCCCTGTTTCCCAGCGTGTGCGCCCCAGATGGGAGCCAGGAGCAGACGTCCATGCAGACTTCAGCGCGGTTGCTGGGCAGGCTGCTGGAAGCCACCCTGTCCCCCGAGTGTCCTGCCTGAGGAAGCTCAAAATATGTGCTGTCTGGCTCGCTGTAATAACACAGAGAGAAGCCGCATCAATCACGAACGGATACGAGGGTGCTCCACAAGTGCTCAAAGGTTGTTCCCTCATCAGCGGTGGACGGCTGGGACATCTTGGATGTTGGACAATCCACCGCAGGGCAGATTACACTAAaaatc

Function

GO:

id name namespace
GO:0010332 response to gamma radiation biological_process
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator biological_process
GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator biological_process
GO:0031571 mitotic G1 DNA damage checkpoint biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0010165 response to X-ray biological_process
GO:0034644 cellular response to UV biological_process
GO:0043508 negative regulation of JUN kinase activity biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0000785 chromatin cellular_component
GO:0005829 cytosol cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0002039 p53 binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251621.1 True 331 lncRNA 0.57 3 22909647 22911382

Neighbor

gene id symbol gene type direction distance location
fam110a LOC107755603,LOC107703992,LOC107678459,LOC107570008,LOC107553114,LOC107752568 coding upstream 195532 22710095 ~ 22714115 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding upstream 200089 22673889 ~ 22709558 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding upstream 236365 22661149 ~ 22673282 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding upstream 250400 22647848 ~ 22659247 (+)
LOC122351043 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574 coding upstream 351452 22554867 ~ 22558195 (+)
LOC122350040 NA coding downstream 32828 22944210 ~ 22946154 (+)
plod1a plod1a,plod1,LOC107698842,LOC107678430,LOC107748983 coding downstream 45487 22956869 ~ 22968973 (+)
nppal zgc:195023,LOC107595800,LOC107748995 coding downstream 511290 23422672 ~ 23423662 (+)
nppb LOC107687134,LOC107748982,LOC107595789 coding downstream 514526 23425908 ~ 23427204 (+)
nppa nppa,LOC107691053,LOC107602452,LOC107595801,LOC107687143 coding downstream 517533 23428915 ~ 23430926 (+)
G66261 NA non-coding upstream 109493 22799639 ~ 22800154 (+)
G66189 NA non-coding upstream 377897 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 396402 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 620800 22288308 ~ 22288847 (+)
G66022 NA non-coding upstream 624215 22283734 ~ 22285432 (+)
LOC122350915 NA non-coding downstream 318661 23230043 ~ 23231024 (+)
LOC122350913 NA non-coding downstream 320182 23231564 ~ 23239812 (+)
G66344 NA non-coding downstream 326595 23237977 ~ 23238253 (+)
G66350 NA non-coding downstream 521427 23432809 ~ 23433745 (+)
G66351 NA non-coding downstream 522736 23434118 ~ 23435033 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other upstream 182203 22724582 ~ 22727444 (+)
mfsd2al2 NA other upstream 185739 22715379 ~ 22723908 (+)
LOC122350000 ddx51 other upstream 369414 22532468 ~ 22540233 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 788851 22119913 ~ 22120796 (+)
G66010 naa35,LOC107757435,LOC107752550 other upstream 791813 22116283 ~ 22117834 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 62613 22973995 ~ 22987162 (+)
prdm16 prdm16,si:ch211-263k4.2 other downstream 143234 23054616 ~ 23401562 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other downstream 492331 23403713 ~ 23410561 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other downstream 720968 23632350 ~ 23634065 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 841186 23752568 ~ 23804049 (+)

Expression


Co-expression Network