LOC122350852


Basic Information

Item Value
gene id LOC122350852
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20785366 ~ 20788340 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251628.1
CTCTGCGCTCTCGGCAAACACCTCAACACTCGCTCTTCAAGTGCAGCTAACTCGATTGACATCACCCGACTACACGTCGCGTTTTCTGCTGATCCCGTAATGCGAGTGCATGCGTTTTATAACGTTATATTAGAGCTAATGGCCAGGCTGGGCGGCGAGACAAGGCTCTCTGTGTCTTTTAAGGACAATCTCATGGTGTGTTTAGAGGTTAGAGAGAGTTCAGGGGTTACTGTGACAAAGCGAGTCTGAGCCGGATAGAGACCGaaacgaacacacacacgcaaccGAATACCCTCTGGCTGCCAAAGACTCAATGATGACATTGTCAGTCACCCGTCTGTGTTTATTATGTCAGGGTTTATTATGTCTCCATGTCACAGGGACACTTCGGACTGAGTAAGAGCAACAAATCAGTCATTAAAACCACTAATAGATGCTAAGCAGCCGGACTGCTGTTTAAAGGCTGGGAATAAACGCTAATGAgTTTACCAGCGGTGAATCAAACCACACAGGTCTGCTGAGGACACAAGCCACCATCCTTCAATCCTCCTGACCTCCAACCTGCCTGACTGGAACCCACCAGCAGCTCTTATCCAGCAGCCATCACTGAACACTAAGGAGTGGCATGTACCGTATACACCACTCGTTCTGGCTAGAAacactggattttttttataatctcaAGAACAGGACGCCGAACAAAAGCAAATGCTCTGCATGACCGTCCACATCAGTTACACAAATCAATACAAGCTCAGGTAGGGTTTACGTGCATCAATAAAGATTAACTGACacaactattaaaaacacatcaggGATTTGGTACGGGGGGGTGAATGAATGTTTACAGGTGAATTAATCATTCACCACAagatcagaaataaaatacatgggATTGCTTTTAACCTCATGCTGACTTTTCAGGgatacttttctttctttcatcttcagaacaaaaaCCGATATAAAAAATCCATTTAAACACTGataagcacacaaacacacacacacacacacacacacacacacacacacacacacgtttctgTTCAACCGAGTTATTGTGTGTGCTCAGGATAAAATGCCTGGTTAATGTGTATTACATTGATGTCTTTACGTGCATTTCGAAGCTTTTCAATTTGGTAGCACTGACTTTCAATGgatgcataaaaatgattacattaaaaatatgttcatgttCTGAATATAATTAAAGTCTTAAGattggaatgacataagggcATTAAAGCGGCTTTCTACCagaatatagatagatagatagatatatatatatatttgcaattcaGACAGAACTTTTCACAGAACTGCAAGAATGATATATAAAAGCAGAATTACAAGATAAAGTGAGATTTACAAGTACAATACAAAtgctgaattatgagatatagaTGCACAATTATTAGATATAAAAAACTACAAGCTCAAGTTCTGAATTGTGAATGCAAGAATCGCTTGATACACATAATTATGAGATGCAAAGAAAAGTCTGAAAAGATTTTGAGTCATGAGTGAAAAATTCTGagatataaaagtaaaattgcaaGCTAGAAATGCAGAGCTGCGAGATCTTAAAagcagaattatgagatataaacagaATTGCAAGCTAAAATTGTGAGAAATTAGAGTTGTGAGATAATGTATGGTCATTTTTTAACTAAATCTGTCTGTATAATAAATatccatttctttctttattcccATCTGATACAATGACATATGAAGTGTACATACTCACAGTGGCcaatgtgtgcatgcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251628.1 True 1782 lncRNA 0.39 3 20785366 20788340

Neighbor

gene id symbol gene type direction distance location
fkbp15b LOC107698100,LOC107714536,LOC107556225 coding upstream 37221 20723280 ~ 20748145 (+)
tubb2b tubb2b,tubb4b,LOC105901187,LOC103024866,LOC101061694 coding upstream 124396 20657928 ~ 20660970 (+)
fgf17 fgf17,LOC107698084,LOC107678395,LOC107721084,LOC103025711,LOC106585328,LOC106580010 coding upstream 137304 20641555 ~ 20648062 (+)
nr5a1a LOC107563852,LOC107698083,LOC107714627,LOC107570014 coding upstream 192464 20581695 ~ 20592902 (+)
nr6a1a nr6a1,nr6a1a,LOC107721088,LOC107698081,LOC107753334,LOC107563838,LOC107678448 coding upstream 215079 20549147 ~ 20570287 (+)
ube2d4 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC106607701,LOC108236573 coding downstream 75320 20863660 ~ 20874280 (+)
dbnlb dbnl,dbnlb,LOC107698106,LOC107678433 coding downstream 86329 20874669 ~ 20892624 (+)
arid5a LOC107698108,LOC107556218,LOC107747803,LOC107721097,LOC107678432,LOC107563170 coding downstream 113469 20901809 ~ 20916978 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221,LOC107721098 coding downstream 131673 20920013 ~ 20925001 (+)
ppp1r3c2b LOC107747797,LOC107698110 coding downstream 140998 20929338 ~ 20931019 (+)
G65552 NA non-coding upstream 26122 20725202 ~ 20759244 (+)
G65520 NA non-coding upstream 122797 20583504 ~ 20662569 (+)
G65529 NA non-coding upstream 174443 20610571 ~ 20610923 (+)
G65517 NA non-coding upstream 225129 20559972 ~ 20560237 (+)
G65507 NA non-coding upstream 318159 20465899 ~ 20467207 (+)
G65754 NA non-coding downstream 151082 20939422 ~ 20943379 (+)
G65768 NA non-coding downstream 230952 21019292 ~ 21019536 (+)
G65769 NA non-coding downstream 237057 21025397 ~ 21025838 (+)
G65913 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 706472 21494812 ~ 21495538 (+)
G65914 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 708086 21496426 ~ 21509076 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other upstream 353534 20423281 ~ 20431832 (+)
timm17b timm17b,LOC107722912 other upstream 646002 20135119 ~ 20139364 (+)
rfk rfk,LOC107740987,LOC107723557 other upstream 751759 20030034 ~ 20033607 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 1511596 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 1583679 19199988 ~ 19201687 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 170260 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 414108 21202448 ~ 21204346 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 570897 21359237 ~ 21374625 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other downstream 681650 21469990 ~ 21538986 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other downstream 963422 21751762 ~ 21754720 (+)

Expression


Co-expression Network