LOC122350891


Basic Information

Item Value
gene id LOC122350891
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7951561 ~ 7954642 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251635.1
CTAGGTCACATCCCTTTCTGGTATCCCTGCATGGATCATGTGAAAGTTACCAGGTGTAGTGGCTTTAAATTGTCATGACAGAAGTTGAAAAATTGGATTATAGCTTTTCACAGACAATGAAGGGGTGAGAGGAGATGTCAAGCCCCAAACCCCCTGCTACCCGTCAACGACGTGACCCACAGTGCTACATTCAGGCTAATTTCCCGTCTCTTTGTCCTTGGATTCCTTTTCATTGTCAGTGGGATGATAACAAACGACAGAGGCAGAGTTCCTTCCCGAATGATTCAGGCAGAGAGATGGGGTGCGGTGGGATCTGACTAAAGGCTGATGAGAGTGCGGTGATCATGCAAGTTTGTTTTGTCATTCAGTTGCTGTCTGAATGTTGTGCAAAACATTGTGCAAACATCCAGAACCATTTTAATACGTTTCTATTATTATAGGGTTGCGCTAGTGCCACAACAATGAATTCACTACTTACAAAGTGTGTGCActagaaacactgaaaaggaTACATCTGGATTGAAATAGGCCTCCTTAAGTTACAGCACACCTGCCTAGAGTACCATTTGTCAAGTGTC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251635.1 True 578 lncRNA 0.44 3 7951561 7954642

Neighbor

gene id symbol gene type direction distance location
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding downstream 188352 7750415 ~ 7763209 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding downstream 211105 7688861 ~ 7740456 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 299255 7594983 ~ 7652306 (-)
LOC122350884 NA coding downstream 568749 7380546 ~ 7382812 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding downstream 573804 7375035 ~ 7377757 (-)
agbl4 agbl4,LOC107603279,LOC106613892 coding upstream 81980 8036622 ~ 8137275 (-)
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding upstream 317842 8272484 ~ 8275399 (-)
faf1 faf1,LOC107743872,LOC107707577 coding upstream 330589 8285231 ~ 8346021 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding upstream 402205 8356847 ~ 8371737 (-)
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding upstream 418015 8372657 ~ 8391494 (-)
G61965 NA non-coding downstream 172997 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 288302 7662217 ~ 7663259 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding downstream 403238 7545810 ~ 7548323 (-)
LOC122350888 NA non-coding downstream 557352 7390288 ~ 7394209 (-)
LOC122350886 NA non-coding downstream 573102 7377755 ~ 7378459 (-)
LOC122351107 NA non-coding upstream 298896 8253538 ~ 8269217 (-)
G62076 NA non-coding upstream 472643 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 553249 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 757395 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 958840 8913482 ~ 8914004 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 263999 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 848568 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 895132 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 1134814 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 1508579 6423742 ~ 6442982 (-)
LOC122350139 elavl4 other upstream 162366 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 437703 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 692628 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 697662 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 1302601 9257243 ~ 9262826 (-)

Expression


Co-expression Network