LOC122351008


Basic Information

Item Value
gene id LOC122351008
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16079362 ~ 16094560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251675.1
CATGGTTACGCTTGAAGCGGTTGTTTGGAGAACCGGACAGTTTAAATGTTCGCGATTTACTTTCatataaagttacttttttcttttgtcaccTTCTGCTAGCATGACCAGCTGACCTTCCGTTGGAAAGTCAACGAGTTTGAATCTGGCTGTCATCCGTGAGCTGTAACAGCCGGGGCTGTGAACACATTGCAGTGCCCGAGGGCAGTAGCGTGGACAACCTGTGCTCTCCTCACATGAGTGAGCGGCGAGCGGTCCAGGGATCCGAGCTGGCACGCTCAGCCAAACAGGTGTATGATGGGAAGACGCGGGCTGTGAAGGGTGAATTTTCTTACGTGGAGGATCCTTATGCGGTGTTCATTGCATCCTACGCACTGAAAGCACAGGAAAGAAGTTTAATTCACCTGACAGTACTTGTGCAGATTATGAGTTTCAGGTATGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251675.1 True 444 lncRNA 0.49 3 16079362 16094560

Neighbor

gene id symbol gene type direction distance location
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding downstream 87104 15967500 ~ 15992258 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding downstream 130579 15833965 ~ 15948783 (-)
LOC122350591 lmx1b,lmx1bb,LOC107550585,LOC107723253,LOC107564042,LOC107753135,LOC108434405 coding downstream 431040 15578108 ~ 15648322 (-)
lmx1bb lmx1bb,lmx1b,LOC107550585,LOC107723253,LOC107753135,LOC107564042 coding downstream 570167 15496493 ~ 15509195 (-)
LOC122350755 zbtb34,LOC107723248,LOC107550586,LOC107727329,LOC107564041,LOC107727326 coding downstream 672192 15393349 ~ 15407170 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding upstream 96527 16191087 ~ 16192344 (-)
LOC122350700 LOC107550582,LOC107723237 coding upstream 218944 16313504 ~ 16344494 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding upstream 259348 16353908 ~ 16363944 (-)
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding upstream 304016 16398576 ~ 16407398 (-)
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding upstream 668737 16763297 ~ 16835560 (-)
G64476 gapvd1,LOC107669250,LOC107753155,LOC107555093,LOC107723237,LOC107550582 non-coding downstream 15609 16062879 ~ 16063753 (-)
LOC122351100 NA non-coding downstream 297475 15767668 ~ 15781887 (-)
G64409 NA non-coding downstream 427503 15651636 ~ 15651859 (-)
G64359 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 783141 15295350 ~ 15296221 (-)
G64357 hmcn2,LOC107659581,LOC107723245,LOC107580106 non-coding downstream 786377 15292345 ~ 15292985 (-)
G64481 NA non-coding upstream 37051 16131611 ~ 16132812 (-)
LOC122350933 NA non-coding upstream 166977 16261537 ~ 16283392 (-)
G64502 LOC107723241,LOC107659605,LOC107550566 non-coding upstream 278761 16373321 ~ 16376597 (-)
G64503 LOC107723244 non-coding upstream 282554 16377114 ~ 16377369 (-)
G64508 NA non-coding upstream 285301 16379861 ~ 16384905 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 378466 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 795232 15283861 ~ 15284130 (-)
G64228 NA other downstream 1297652 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 1347971 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 1624119 14385600 ~ 14455243 (-)
LOC122350093 NA other upstream 313274 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 951907 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 1225816 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 1264825 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 1506698 17601258 ~ 17645511 (-)

Expression


Co-expression Network