LOC122351100


Basic Information

Item Value
gene id LOC122351100
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15767668 ~ 15781887 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251683.1
GCTGCTTCGATAGGCAGCAGCAGTCATCCACAGTATAAGGCCATTCTCACAGAAAAGATTTCTTTCTCTTGGCTAGTTATGCTGAATGGCCATGTTGATTCGATTGGAGACCAGTGCATGTTAACACAACATTATATCGTCCGTgcaaccacaaaacaaaacagaataAAAACCGCTGAAAACGGAGAGCGGAGGTTATAGGACAGCTTAAGAACACTAAAGGGTTTTAAATCTATCTCCATCcccctctctttccttctctcagCTGCCCAAACAACAAGGCCTGAAAAAGATTGCAGTTCATTTCAAAGCGCAGTGGATGGAGGCCTCATTTACGCGCTCCTGGCAACTCAATCAGGCCAGCCAGCCCTGATGAactctctctctctcatggcCGACTGGGCTGGAGTGTCCCCAGTGTCCTCTATTACCCAGCGCCCCACTGAACATGCTCTGCAGTCTGCTGACCTCCTGCCCTGCCTGTCACCCTGATGGCTACTGTTATCCCAGGCTACTTATTTCACCAAAACGGCCTTTTGTTCCTCCTTGTATTGAAAACATCAAGCCAAGCCAATTACAGGCATAAACA
>XR_006251684.1
GCTGCTTCGATAGGCAGCAGCAGTCATCCACAGTATAAGGCCATTCTCACAGAAAAGATTTCTTTCTCTTGGCTAGTTATGCTGAATGGCCATGTTGATTCGATTGGAGACCAGTGCATGTTAACACAACATTATATCGTCCGTgcaaccacaaaacaaaacagaataAAAACCGCTGAAAACGGAGAGCGGAGGTTATAGGACAGCTTAAGAACACTAAAGCTGCCCAAACAACAAGGCCTGAAAAAGATTGCAGTTCATTTCAAAGCGCAGTGGATGGAGGCCTCATTTACGCGCTCCTGGCAACTCAATCAGGCCAGCCAGCCCTGATGAactctctctctctcatggcCGACTGGGCTGGAGTGTCCCCAGTGTCCTCTATTACCCAGCGCCCCACTGAACATGCTCTGCAGTCTGCTGACCTCCTGCCCTGCCTGTCACCCTGATGGCTACTGTTATCCCAGGCTACTTATTTCACCAAAACGGCCTTTTGTTCCTCCTTGTATTGAAAACATCAAGCCAAGCCAATTACAGGCATAAACA

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process

KEGG:

id description
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251683.1 True 589 lncRNA 0.48 4 15767668 15781887
XR_006251684.1 False 546 lncRNA 0.48 4 15767668 15781887

Neighbor

gene id symbol gene type direction distance location
LOC122350591 lmx1b,lmx1bb,LOC107550585,LOC107723253,LOC107564042,LOC107753135,LOC108434405 coding downstream 119346 15578108 ~ 15648322 (-)
lmx1bb lmx1bb,lmx1b,LOC107550585,LOC107723253,LOC107753135,LOC107564042 coding downstream 258473 15496493 ~ 15509195 (-)
LOC122350755 zbtb34,LOC107723248,LOC107550586,LOC107727329,LOC107564041,LOC107727326 coding downstream 360498 15393349 ~ 15407170 (-)
ralgps1 ralgps1,LOC107727327,LOC107669254,LOC108412534,LOC107723240 coding downstream 376917 15307737 ~ 15390751 (-)
zgc:194839 LOC107659596,LOC107686408,LOC107723116,LOC107723115,LOC107575379,LOC107723246,LOC107723230,LOC107667514,LOC107570299 coding downstream 466945 15297625 ~ 15300723 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding upstream 52078 15833965 ~ 15948783 (-)
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding upstream 185613 15967500 ~ 15992258 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding upstream 409200 16191087 ~ 16192344 (-)
LOC122350700 LOC107550582,LOC107723237 coding upstream 531617 16313504 ~ 16344494 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding upstream 572021 16353908 ~ 16363944 (-)
G64409 NA non-coding downstream 115809 15651636 ~ 15651859 (-)
G64359 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 471447 15295350 ~ 15296221 (-)
G64357 hmcn2,LOC107659581,LOC107723245,LOC107580106 non-coding downstream 474683 15292345 ~ 15292985 (-)
G64356 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 477177 15290269 ~ 15290491 (-)
G64355 NA non-coding downstream 478476 15288911 ~ 15289192 (-)
G64476 gapvd1,LOC107669250,LOC107753155,LOC107555093,LOC107723237,LOC107550582 non-coding upstream 280992 16062879 ~ 16063753 (-)
LOC122351008 NA non-coding upstream 297475 16079362 ~ 16094560 (-)
G64481 NA non-coding upstream 349724 16131611 ~ 16132812 (-)
LOC122350933 NA non-coding upstream 479650 16261537 ~ 16283392 (-)
G64502 LOC107723241,LOC107659605,LOC107550566 non-coding upstream 591434 16373321 ~ 16376597 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 66772 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 483538 15283861 ~ 15284130 (-)
G64228 NA other downstream 985958 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 1036277 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 1312425 14385600 ~ 14455243 (-)
LOC122350093 NA other upstream 625947 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 1264580 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 1538489 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 1577498 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 1819371 17601258 ~ 17645511 (-)

Expression


Co-expression Network