LOC122351117


Basic Information

Item Value
gene id LOC122351117
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 924448 ~ 946339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251687.1
CTCTCTTTAATGTTGGCGGGAAGATCCGATAACGTCAGTCGCGTGAAGGAGTACGCAAGAAGATATTGAGAGAAATGTTCCGGTGTTTTTGTCCTTACGGTCACGGATCGGGATGAACGAcgtgaggaagatGTCTTGGactgacatgaggGTGATGGTTCCAGCGGAGATGTAGTTTCGGGGGGGCGAGAGAGCGCTGTCACGGCCTGAAAGCTCAGCACACTTGAAGCTGGAATCCATTTATTCCCCAGGCCAGGCCTAATTACCCCTCTCTGCCACAGACTCTGAAAGCGACTTCTGGTTTTCTGTGCCGGATCAAAGAAGACGGATGTCGGGCGATTGGGCCGCTGACATAATGCGCTGTGGCACGCAGCTCGCTTTTATTAGCACAAGCCTGTTATTTCCCGGCGACTCTAAGTGTGGACGGGCAGTGATAAATGCTGTCGCACACGCTTGATGCGATTCATTTGTCAGAGGCCTGAAAAAGGTTAATCAGTATTCTCCAGCCGGGTTACGGCCCTCCGTCTCCCTCTCAGCAGTAATTGTGCTCCTGTTACGGACAAACTCAGGCAGCTGGGGACCCGAGTTACGTGCAATTATATTTCTGTCCATCTGCGGGGGGAAAATCCTAATCATAACGCTCACTTGACGTCGACTCGCTTTCATAATTTATACTGCGAGTATTTCACACGCAGACCTGCATGACCATGGGAAACGCTGGGGAAAATCAAtgtaaattcatatttcataaggCCATAATTGCGTTTGAGAGTGTGCGGTGGTCGTTTGTTTCAGCTGACAGTACCATACATTTGAGCTCCGGCTCTTATTTCATCTCACAGGCCTTCGATCTCCCAGCGCTCGTCTTTTTACCGAAAACAAGGGGTTTGTTGTCAAAGAAAATGGgccttttttttaacacttgacAACGTTCTATCATCTGTGAAGTTATCGATTTGCCAGTGTTTTAACCATCAAACTGGATCTGTTTGAGCGACTCTggtttttaaacaatttctttgACAGGCGAGGCGTCACAGCAATTGCCCCGCTTTTAAAGACAGTATTTCAATTTGCCGAGAGCCCTTCAAGTGAAGCGCGGGGCCCCTTTGAAGGAGTATCAGAGCGCCTTGGGGCCGACAGAGTTGTCACGCTACGAGCGAGCTAAAAAATGGAGCGCCTTTGCTTTATAGATTGCTGTTAGGTCAACAAAACTTTGGCAGCATTGATTAACTTGACAGTGAATGCGGCAGTACATTTATCACTAATAGCCCGAGCGCAGAAAATCTAATAAGAGCCCAACAATCCAGCGTCCGTCCAAAAAAACAGGAGCCAGACGTGCCCCGCTGTCATTAATTGAAGCTAAAAAGTGGATTCTGTCTTATCTGGCTCTCGCAGCGGTTAAAGAGTTCAGAAAGCCGGCTCGGGGATTGTGTTGTTGGGACTCTGATTTGCATGAGCGGCTATAAAACACTCTGACCGCACGTCACAGTTTCGCAGAGAGCCTCATCGATTAGTTGTCACCTGGGCATCAGCTTCACTCCTAGgattcaattttttttcccgCCCGTTTTGCATACGCTATCGACCGCGAGCGGGTAAATGAGCAGAACGCGCCGAGACCGGAGGATGAATTGTTTACTCGCATAAAAATAACCTTTCAATAGCGGAAGATGCATGGCGCGGGCCCGGGCTGGCGTTCTGCTGCCCCAAGCAGATGGCATTCAGCTGCTATTGATCCGGCTCAGAACCGGCCCGTCCGTCCCAAAGCCCTCCTCCAAATTAAGAGACACACGGCCGACCGCGACACTTCATAAACGTCAGCCGTGTTTTCAGCCTGACGAAAGATCACCTTCACTGCTAGTTTAACCCTCTACAACCTAAACGACTTTTTGAAACACATCAGGCTTTTATGGCTCATATAGTGAGAATGTAGAGGACTCGAAAACGTTTTGATGATTGCGGTCTAAATCAGTGAAGCGGCGGATACTGATCTATGTCTCTGTAAATGATCAAACATATAATGCAGCGCTGATGGAGAGCTGATGAAACAcaggctcctcagaagatgtgagatgctttggaacagtgaaagtaaagctcctcaaaagatcAGATTCTTTTAGAAAATGACTGATGGAGAATCAGGTAAAGCTGAGCTGCTTCAGTCCAGTAAGAGTTCATTTGGAGGATGATCTCGATCAGAATCAGTCCAGATCTGACCCCAGAACCAGACGCTGAAGCTGGACGTAAGAGCTCTTACTGGATAAAACAATCTAAACTATTAGTGTGAAGACGTGAGGAGACTGAGCTTCAATGTGGATCATTTACAGGCCTtagtaatgtttatattaaatatgatttataggagtttttattattaaaaaaat
>XR_006251688.1
CTCTCTTTAATGTTGGCGGGAAGATCCGATAACGTCAGTCGCGTGAAGGAGTACGCAAGAAGATATTGAGAGAAATGTTCCGGTGTTTTTGTCCTTACGGTCACGGATCGGGATGAACGAcgtgaggaagatGTCTTGGactgacatgaggGTGATGGTTCCAGCGGAGATGTAGTTTCGGGGGGGCGAGAGAGCGCTGTCACGGCCTGAAAGCTCAGCACACTTGAAGCTGGAATCCATTTATTCCCCAGGCCAGGCCTAATTACCCCTCTCTGCCACAGCAAACTGTCCCATCATGCAGCAGGAGCGCTCCTGAGGGACTCCGGCTCTGCTGATAATGAAGCCTGTCATCTCCGCTCACCTCCACGCCGGACACACTTCCAGCTCCGAGCGCCTCCTCCATCGATTCGCTGCTATTTTCCAAAGCGTCCGGCTGAAATACCCTCCCAGAGCTGCACTTGTTGGCTGAAGATGTTGTAACAG

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0022414 reproductive process biological_process
GO:0051704 multi-organism process biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251687.1 True 2390 lncRNA 0.47 4 929701 946339
XR_006251688.1 False 483 lncRNA 0.54 4 924448 946339

Neighbor

gene id symbol gene type direction distance location
prdm6 prdm6,LOC107713557,LOC107726219 coding downstream 10073 885192 ~ 914375 (-)
nudt12 nudt12 coding downstream 115297 803023 ~ 809151 (-)
srp19 srp19,LOC107704595 coding downstream 138026 783648 ~ 786422 (-)
lrrc2 lrrc2,LOC107697579 coding downstream 153928 760218 ~ 770520 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding downstream 177112 743193 ~ 747336 (-)
snx2 snx2,LOC107566389,LOC107713555,LOC107704573 coding upstream 1560 947899 ~ 961374 (-)
LOC122350969 sncaip,LOC107577394 coding upstream 19830 966169 ~ 980033 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding upstream 35295 981634 ~ 988560 (-)
prr16 LOC107713553 coding upstream 52309 998648 ~ 1004413 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding upstream 70551 1016890 ~ 1057927 (-)
G60112 NA non-coding downstream 47579 875959 ~ 876869 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding downstream 72289 845419 ~ 852159 (-)
G60085 NA non-coding downstream 89317 832727 ~ 835131 (-)
G60079 NA non-coding downstream 103680 816461 ~ 820768 (-)
G60061 NA non-coding downstream 167805 755624 ~ 756643 (-)
G60118 hsd17b4 non-coding upstream 65028 1011367 ~ 1011818 (-)
G60131 NA non-coding upstream 114754 1061093 ~ 1062238 (-)
G60133 NA non-coding upstream 118058 1064397 ~ 1065200 (-)
G60153 NA non-coding upstream 174589 1120928 ~ 1122233 (-)
G60154 NA non-coding upstream 237969 1184308 ~ 1184649 (-)
csgalnact1b LOC107712620 other downstream 185076 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 192604 723145 ~ 731844 (-)
ccl27a NA other downstream 353475 565886 ~ 570973 (-)
G60098 NA other upstream 189062 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 194359 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 402832 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 615207 1561546 ~ 1606609 (-)
G60220 NA other upstream 630466 1576805 ~ 1580616 (-)

Expression


Co-expression Network