Gene
RNA
| Item | Value |
|---|---|
| gene id | G31690 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 11515811 ~ 11566155 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU35908 | True | 1220 | lncRNA | 0.45 | 2 | 11515811 | 11566155 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_11489380_11502517 | COLEC12 | coding | upstream | 12943 | 11489380 ~ 11502868 (+) |
| CI01000004_11432849_11451784 | MGC115231, YES1.L, YES1 | coding | upstream | 62820 | 11432849 ~ 11452991 (+) |
| CI01000004_11215878_11229028 | LIPIN2, LPIN2 | coding | upstream | 286689 | 11215682 ~ 11229122 (+) |
| CI01000004_11181665_11204466 | MYOM1A | coding | upstream | 309735 | 11181665 ~ 11206343 (+) |
| CI01000004_11168348_11170417 | BAG1 | coding | upstream | 345037 | 11168348 ~ 11170774 (+) |
| CI01000004_11592217_11595358 | NA | coding | downstream | 26062 | 11592217 ~ 11595358 (+) |
| CI01000004_11598169_11606266 | MALRD1 | coding | downstream | 32014 | 11598169 ~ 11606283 (+) |
| CI01000004_11608619_11618346 | MALRD1 | coding | downstream | 42464 | 11608619 ~ 11618427 (+) |
| CI01000004_11622516_11634475 | NA | coding | downstream | 56361 | 11622516 ~ 11634925 (+) |
| CI01000004_11666900_11667179 | NA | coding | downstream | 100745 | 11666900 ~ 11667659 (+) |
| G31677 | NA | non-coding | upstream | 49440 | 11466036 ~ 11466371 (+) |
| G31665 | NA | non-coding | upstream | 108906 | 11406674 ~ 11406905 (+) |
| G31664 | NA | non-coding | upstream | 109200 | 11406286 ~ 11406611 (+) |
| G31663 | NA | non-coding | upstream | 109546 | 11405919 ~ 11406265 (+) |
| G31662 | NA | non-coding | upstream | 110055 | 11405164 ~ 11405756 (+) |
| G31721 | NA | non-coding | downstream | 126700 | 11692855 ~ 11694150 (+) |
| G31723 | NA | non-coding | downstream | 128232 | 11694387 ~ 11696280 (+) |
| G31727 | NA | non-coding | downstream | 140429 | 11706584 ~ 11706970 (+) |
| G31737 | NA | non-coding | downstream | 182370 | 11748525 ~ 11748761 (+) |
| G31625 | NA | non-coding | downstream | 224842 | 11790997 ~ 11803727 (+) |
| G30797 | NA | other | upstream | 1018023 | 10497376 ~ 10497788 (+) |
| CI01000004_08976512_08980033 | TTPA | other | upstream | 2534827 | 8976254 ~ 8980984 (+) |
| G28859 | NA | other | upstream | 2916208 | 8599235 ~ 8599603 (+) |
| CI01000004_08414451_08436256 | NA | other | upstream | 3064584 | 8414316 ~ 8439933 (+) |
| CI01000004_07654234_07655677 | MRPL34 | other | upstream | 3859428 | 7654234 ~ 7656383 (+) |
| G31710 | NA | other | downstream | 71096 | 11637251 ~ 11642400 (+) |
| G31865 | NA | other | downstream | 625975 | 12192130 ~ 12197418 (+) |
| CI01000004_12646972_12652534 | NA | other | downstream | 1076599 | 12646838 ~ 12652570 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 2457392 | 14035393 ~ 14039142 (+) |
