G31710



Basic Information


Item Value
gene id G31710
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11637251 ~ 11642400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU35938
ATTGTGTCTGTGGAGCTACATTAAGACCTGCATTTTTCAGAGCCGCAATTCTTGAGGAAATGTCTGAAACCTGGCAAGCAGATATGAAAATGACACAGTATGTGTACAGTAAGGCTTTGCAGAAAGACTGATATGTAAAATGTTATTGCTAGTACTTCTACATCAGCTTGTAGACGACTCTGTATAATTTGCTCTTCCACTTCTTCTGAATCAGTTTCTGGTTCAAACATATATGGCTGAAGTAAACCAGTATTTGCACTTTCAATCGTGTAGCGTTTACTACAGTAAAGTTGAGCGTGTGGATCAGGTCTGAGCTAGTGTGACTGAGTAGAGGCAGGGCTTTTTCACAGGAAAAACGTTTAAAAAAGTCATTTTGGTGATCGAAGATGAGTTTTAAGGGATAAAATTATTGACTACAGGGGGACTAGTTTTAGTTAAATATAACAACACCTATACTGCTCATTAACTCAAGTGTTACTGCGTCTTCAGAGCTATGAGATGCTGCTGATGAGATTCAGAAAGAGAGAGAGAGCACAGCGTCCAGGCCGAACGCACCTGGAGCTCAGACTGCTGCACCTGGGCTGCTGCAGAGGCCACCTGGTCCTCCAGATGAGCGAGATCTCTTTCGGTGGTGGATCCACTGATGCTGCGCGCACACTCCTCCAGATCCCCCAGTTCAGCTTCGAGCCCGTACACTGTACCTGCCGCCACATACACATTCTCCTCCAGTCTGCTGAGCTGCTCGTCCAGTCTTCTGGCCTCGGCAGGGGGAATGTTCGGGAGGTCACTGTGGTCCATTTGGCTTTGTCCGTCTCCCATAGATCCGTGAATCAGATCCTCAGTGGCGTTCAGCACTTTCAGCACCTCGGAGGTGATGCTGCGCAGTGATACGGCCGAGTACTTCTTGTAGATCTCCTCTGGTGACAGATACTCCTCCTGACCAGATGGGGCACTGTGCTTGTCCCTCTGCTCCCTCATTTCAACCAAGTCACCGTGACCGTTGCCATCGTTCCTTTGAACGCTCCCTTCTGATGATTTGATGCATTGTTTGTCTTCTGACTCCTCAGTATCTTCAGTGCTGTTCTTTAGTGCCACAACTTCATTGATTTTGCCCTTTTCCTTCATTTCTTTTTCCTGAACCTTCTTCGATTCTCCACCAACAAAGCATCTCTCAAATGTTTTCTCTTCATCCATGTCCTGTTCAGTTACATTCTCCTTCTCTTTTATCATCTCTAGTTTCTCTCCCTCTGTGTCTAAAACTACCCCCTCACTAGTGTAAGCTTCTATGTGTTCTTCCATATCATCCAAAGCCTTCGCTACAGTATCGATGATCCTATCAAATTCCATTTTTCCATCTTCACTTACAAATCTACTCAAAGCCAGTTCACAGGATAAGGCCTCTCCCTGCTCCTCAATATGATCAACCATCTCTGTATTCTCAGATCTGCTCTGCTGACCTTCAACCACATTTCCACCATCTTTTATTTCTGCTTTTCTCTCTTTAGTCTGAACATCTCTCTTGTTCTTTGTCTCCTCACTTCTCTCACTAGCGATCTCATATTGTGCATCGGTCTCAGCAAATGTATGTTTTTGGCTCCCAAAGCTCATTTCTTCTGACATTTGTGTCTCCTTCTTGTTCTTTTGCCTTTTCTCTGATCTCTCTTCTTCTGCTTTTTCAACCATCTTCTCTAGATGATTTTGTGTTGTATTATCACGTTGTATCATTTTGTTTCCATCTGTTCTGTCATTTACCACCAGCATCTCAGTTCTCAACCTGTCCAGTTCATCTTCAGTGGAGGAAAGTAGTGTCTCACTGACCTGACTGGTCAACTCTCTGAGTTTGGAAGTCAGATCATCTTGTTTCAACATGTCAGCTCTCATTAATTGATTTGTGGCTTCAATTTCATCAGATTTTTCTTTTACAGCCTTAATCTTCAATAAAGCATCTCCCATAACTTCATCTCCCACATTTGCTTTTGTTTCACCGTCATCATCCCACATTTGATACTCCAACCGGTCCAATTCATCCTCTGTGGAGGAAAGTTGTGTTTCTCTGACTTGACTGGTCAGCTCTTTCAGTTTGGAAGTCAACTGCTGATCTAAAGATTCAACCACACCATGGGCTCTATGATTCGAATTGCTGGGAGAATTGAGATCAGATCCAAATGGATCAGGGGTCACAGCTCCAGAGCTCAAGATGTCAGGGGTAGCAGTGTCTGAAGTGTCGGCTTCCAGAGCATGATCACTTGGTCTTTTTCCATGCAAGGCTGAGTCTTGTTTCACATGACGACTCTTCACCAGAGAATCTGAGAGTTG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU35938 True 2316 TUCP 0.44 3 11637251 11642400
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000004_11622516_11634475 NA coding upstream 2326 11622516 ~ 11634925 (+)
CI01000004_11608619_11618346 MALRD1 coding upstream 18824 11608619 ~ 11618427 (+)
CI01000004_11598169_11606266 MALRD1 coding upstream 30968 11598169 ~ 11606283 (+)
CI01000004_11592217_11595358 NA coding upstream 41893 11592217 ~ 11595358 (+)
CI01000004_11547197_11557429 CACNB2B coding upstream 79697 11547197 ~ 11560552 (+)
CI01000004_11666900_11667179 NA coding downstream 24500 11666900 ~ 11667659 (+)
CI01000004_11668089_11670426 ACKR4A coding downstream 25303 11667703 ~ 11670922 (+)
CI01000004_11747225_11747971 RNF182 coding downstream 104136 11746536 ~ 11748095 (+)
CI01000004_11750356_11765031 RANBP9 coding downstream 107365 11749765 ~ 11766104 (+)
CI01000004_11771176_11773391 EPDR1 coding downstream 128689 11771089 ~ 11773516 (+)
G31690 NA non-coding upstream 71096 11515811 ~ 11566155 (+)
G31677 NA non-coding upstream 170880 11466036 ~ 11466371 (+)
G31665 NA non-coding upstream 230346 11406674 ~ 11406905 (+)
G31664 NA non-coding upstream 230640 11406286 ~ 11406611 (+)
G31721 NA non-coding downstream 50455 11692855 ~ 11694150 (+)
G31723 NA non-coding downstream 51987 11694387 ~ 11696280 (+)
G31727 NA non-coding downstream 64184 11706584 ~ 11706970 (+)
G31737 NA non-coding downstream 106125 11748525 ~ 11748761 (+)
G31625 NA non-coding downstream 148597 11790997 ~ 11803727 (+)
G30797 NA other upstream 1139463 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2656267 8976254 ~ 8980984 (+)
G28859 NA other upstream 3037648 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 3186024 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3980868 7654234 ~ 7656383 (+)
G31865 NA other downstream 549730 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1000354 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2381147 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3448844 15091200 ~ 15097173 (+)

Expression


G31710 Expression in PRJCA010000

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G31710 Expression in each Bioproject

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G31710 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network