Gene
RNA
| Item | Value |
|---|---|
| gene id | G31723 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 11694387 ~ 11696280 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU35957 | True | 1037 | lncRNA | 0.32 | 4 | 11694387 | 11696280 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_11668089_11670426 | ACKR4A | coding | upstream | 23465 | 11667703 ~ 11670922 (+) |
| CI01000004_11666900_11667179 | NA | coding | upstream | 26831 | 11666900 ~ 11667659 (+) |
| CI01000004_11622516_11634475 | NA | coding | upstream | 59462 | 11622516 ~ 11634925 (+) |
| CI01000004_11608619_11618346 | MALRD1 | coding | upstream | 75960 | 11608619 ~ 11618427 (+) |
| CI01000004_11598169_11606266 | MALRD1 | coding | upstream | 88104 | 11598169 ~ 11606283 (+) |
| CI01000004_11747225_11747971 | RNF182 | coding | downstream | 50256 | 11746536 ~ 11748095 (+) |
| CI01000004_11750356_11765031 | RANBP9 | coding | downstream | 53485 | 11749765 ~ 11766104 (+) |
| CI01000004_11771176_11773391 | EPDR1 | coding | downstream | 74809 | 11771089 ~ 11773516 (+) |
| CI01000004_11776595_11786233 | STARD3NL | coding | downstream | 80139 | 11776419 ~ 11786917 (+) |
| CI01000004_11863724_11890961 | NA | coding | downstream | 167444 | 11863724 ~ 11891114 (+) |
| G31721 | NA | non-coding | upstream | 237 | 11692855 ~ 11694150 (+) |
| G31690 | NA | non-coding | upstream | 128232 | 11515811 ~ 11566155 (+) |
| CI01000004_11547197_11557429 | CACNB2B | non-coding | upstream | 133835 | 11547197 ~ 11560552 (+) |
| G31677 | NA | non-coding | upstream | 228016 | 11466036 ~ 11466371 (+) |
| G31665 | NA | non-coding | upstream | 287482 | 11406674 ~ 11406905 (+) |
| G31727 | NA | non-coding | downstream | 10304 | 11706584 ~ 11706970 (+) |
| G31737 | NA | non-coding | downstream | 52245 | 11748525 ~ 11748761 (+) |
| G31625 | NA | non-coding | downstream | 94717 | 11790997 ~ 11803727 (+) |
| G31785 | NA | non-coding | downstream | 199573 | 11895853 ~ 11896129 (+) |
| G31758 | NA | non-coding | downstream | 204041 | 11900321 ~ 11931138 (+) |
| G31710 | NA | other | upstream | 51987 | 11637251 ~ 11642400 (+) |
| G30797 | NA | other | upstream | 1196599 | 10497376 ~ 10497788 (+) |
| CI01000004_08976512_08980033 | TTPA | other | upstream | 2713403 | 8976254 ~ 8980984 (+) |
| G28859 | NA | other | upstream | 3094784 | 8599235 ~ 8599603 (+) |
| G31865 | NA | other | downstream | 495850 | 12192130 ~ 12197418 (+) |
| CI01000004_12646972_12652534 | NA | other | downstream | 946474 | 12646838 ~ 12652570 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 2327267 | 14035393 ~ 14039142 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | downstream | 3394964 | 15091200 ~ 15097173 (+) |
| G34220 | NA | other | downstream | 4243077 | 15939357 ~ 15939950 (+) |
