G31625



Basic Information


Item Value
gene id G31625
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11790997 ~ 11803727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU35838
AATTCTGACCGTTTCTTACCAGTTACTATCAGCCGTGTTCCTGTTCCAAACCTTTTGATAGCATTGCCCACTCAGATTAAGTCTATTACAAATACTAATGAATAAAGCAAAACTTCTAGCCTGGTTTAGTTGATTAAGACCACTGTTCCCGATGATCTACACTATTTTAAAGGGATAGATCACCCCAAAATACAAATTTTGTCATCATCGCCTTCATGCCGTTCCAAACCTGAATGACTTAATAAAAAAAACTGCATTTTTCTGTAGAACACAAAATATATTTTGAAGAATGTTTCAACAGTTTTTGTCCATACAATAAAAGCCAGTGCAGTTCGAAACAACAATGAAACCCTTTTCTTTCATTGTATGGACAAACACTGATGAACATTTTAAAAATATATTCTTTTGTTTGAAGAAATTCTGACCGTTTCTTACCAGTTACTATCAGCCGTGTTCCTGTTCCAAACCTTTTGATATAGTAGCCCGGCTGCCATCCCAGCTTGCACAGTAATACATGCCAGCATGATCCTCCTTTATTTCTTTGAGTTTTATGCCATACGAATTTCCTTTTTTTTCAGCGACAAATTCTTTTGCTTCACTTGTAGCAACCCCAGACTCACTCATGTACAGTAGTCTTTTAAACGTTCCACCGACTTTCTTATGATACCAGTGAACATAGCCAGAGCTCAAGTCAGTGACCTCACAGCCGAAGGACACAGTTTTACCCTTTACCTTCACCAAAACCTTTTGAGGTTGTTTTAAACTCACACCTTCCAC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU35838 True 777 lncRNA 0.38 2 11790997 11803727
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000004_11776595_11786233 STARD3NL coding upstream 4080 11776419 ~ 11786917 (+)
CI01000004_11771176_11773391 EPDR1 coding upstream 17481 11771089 ~ 11773516 (+)
CI01000004_11750356_11765031 RANBP9 coding upstream 24893 11749765 ~ 11766104 (+)
CI01000004_11747225_11747971 RNF182 coding upstream 42902 11746536 ~ 11748095 (+)
CI01000004_11668089_11670426 ACKR4A coding upstream 120075 11667703 ~ 11670922 (+)
CI01000004_11863724_11890961 NA coding downstream 59997 11863724 ~ 11891114 (+)
CI01000004_11897082_11898506 MYCB coding downstream 92505 11896232 ~ 11899215 (+)
CI01000004_12033980_12034384 NA coding downstream 229929 12033656 ~ 12034402 (+)
CI01000004_12222833_12223126 NA coding downstream 418199 12221926 ~ 12223244 (+)
CI01000004_12331486_12332789 NA coding downstream 527113 12330840 ~ 12332997 (+)
G31737 NA non-coding upstream 42236 11748525 ~ 11748761 (+)
G31727 NA non-coding upstream 84027 11706584 ~ 11706970 (+)
G31723 NA non-coding upstream 94717 11694387 ~ 11696280 (+)
G31721 NA non-coding upstream 96847 11692855 ~ 11694150 (+)
G31690 NA non-coding upstream 224842 11515811 ~ 11566155 (+)
G31785 NA non-coding downstream 92126 11895853 ~ 11896129 (+)
G31758 NA non-coding downstream 96594 11900321 ~ 11931138 (+)
G31770 NA non-coding downstream 105356 11909083 ~ 11915940 (+)
G31764 NA non-coding downstream 127632 11931359 ~ 11932195 (+)
G31762 NA non-coding downstream 128660 11932387 ~ 11934446 (+)
CI01000004_11666900_11667179 NA other upstream 123338 11666900 ~ 11667659 (+)
G31710 NA other upstream 148597 11637251 ~ 11642400 (+)
G30797 NA other upstream 1293209 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 2810013 8976254 ~ 8980984 (+)
G28859 NA other upstream 3191394 8599235 ~ 8599603 (+)
G31865 NA other downstream 388403 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 839027 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 2219820 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3287517 15091200 ~ 15097173 (+)
G34220 NA other downstream 4135630 15939357 ~ 15939950 (+)

Expression


G31625 Expression in PRJCA010000

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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G31625 Expression in each Bioproject

Bar chart with 29 bars.
G31625 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network