G32225


Basic Information

Item Value
gene id G32225
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 11951571 ~ 11955287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36563
AAATACTTTGTTGTCCCCTTTCTGAAGACTCCTGGCTTAAGCTTTTACCACCATTATATCTTACCAATAATTCACATGGATGCAGTCTTCTTTTGTGAGGAGTATGTGACATTCAGGTGCTCCCGACCTATTTAACATCTCAAATGCCATCTCTATGATTTGAGTGCTGTTGATGCCAGTGTGACTCACGACTTCAGCGGGATGGTGTTCCCAGGTAAGAGCCTTGTGTTCCCAGCCTCATACTGCCTAACCACGGTTCAAGTTCAGTCCAGTCCTCTGCAGGTCGGGCTGTCCAGCTCTTATCGCACAGGACGGCCTCTGCACCGTATCCCTCTCTGGCAGGCAGATGACAGAAATTCAATTAAGAAGATGGAGTGCACTGGCCTAAGGCCAGCAGAGGGAATTATCACAACCATTACAATACGCTTTATTGAGATGCTTTCTGCTTGTTTAACAGCAACACAAAGGGCCCATCACAACTAATGAAGGAATTCTAACAGATGTACAAACAACCTGAGAAAACCACTCACATTAGTCTCATTCATCATGATGAATACTGCAAATCAGATCATGTAAAGGGATAGCTCACCCAAAAATGAAAATTACCCCATGATTTACTCACCCTCAA
>TU36555
AATATTTTTGTGGAAACCACAATAAATTTTTTCAGGACCTCTTTGATGAATAGAAAGTTCAAAAGAAAAGCATTTATTAGAAAATGAAATCATTTGTAACATTATTCATTTTCTTCATTGTCAAGTGAATTTCATTCAAAAAAAACATACTAAACGCAAATTTTCAAACAGTATATAAAACATATTTAATTAAAAAAAACAAAACACAATATATTTGCTACAAATATAATTTATATTTTATAAATATAAAATAATTTGTCTCTATACTGAAACCTCCGTTGTCTCATAAGCATACATTATATTTTCCTATGCATCTGTATATACTCTGATTTTGGGTGAACTCTTAACTAAACTGTTTAAAAGCCAAACTGTCAGACAAATAACACATACATACTGACCTACAAATAAATGTGCTCTGTGCCCTGTTCTCTATTAACCAAGCTCTTAGGGAGAACAAGTTGTACACCTCTATATTTCACCATTTAACTATATTTGTCACCCATGAAAAACTGTTGCCCACACTCCACAGAGCCTGATCTAGAGGGGTGATTTCCGAACACTTCGAGAACAGAAAGAGCTGAACAGCAGCTATAAATGCTTAAGTGACAATCCATCTTTTTTAATGACACTTTATCAATGCATCGCACTCACTTCAGGGCCCTCATTAGTCCATTTCTCTGAGCCGTTAGAACAGCCGGTCTTGCAGGTGACAGCAGCACATTGTTACATGATGGTCTGCCTCTAAAAATATGTTGCCACGTTGGCCTTATGAAATGAAGCAAAAACTGTACATCATTATTAGTAAAAGAGATCAGAATATATGGCCATCATCACATTGTTCTTAAAAAGCATTCCACCTGCTCTAATAGTGCCCAACTTGAGCCCAATTTCAAAGGACTGTCACTTCTCTTTGAAGTTGTGACTAAATATTTGCTGACATTGAGGGAGCGTGTGTCCTTTTTGGAGTGTTTGCTCGCTAGTTTCCACTGAACTGCCCTTCTTCAGAGAGCATGTACACGTGTGCCTGGCCTGCTGCCCTTAGATAAAGAACAGAGAGTGTTAGTGAGGGGGGAGGGAAATCAAAGGGGAAAAGTGATAAGAGTAAAAAATGGGTTGGAATGGAAGAATGTGATGGTTAAACGAGTTCAGATGCAAGATACAACTGTACAGAATAAGGTAAATGTTCACATAACAGCTTGTCTTTTTGCATAATGTGCATGTCATGAAAACAAATACTCACAGGCTGCATGTGCCGGTTGCATCCGGGAGCCCCTTAAAGGATGTTTAACCTGTAACACTGCATTTAATGCTGAAATATGAGTTGTGGGATTAGGAGTGTGTGCTGAAATCCATACCTCTGTAACCATGAAGTACAACATGTCCCGTTATAGAGGTGAGAGACCACTTTACGAAGGAATTCAGTCCAGTTTGAAACCTCCAACAGAGCGTATGGATAGCTGATACACTGCCTCTTCACTGTAAAAGAGGAAGCACATGACACTTGAACAGGAGGGTGGAAATATTTAGAGAACTGTTCTGCAAATTTGGATAATGCCTTCCTGGAGAAGCTGAAAAGCTAACTTGTTAAGTTTGTGTTTGCCAATAAGAAATAAAAACAGAAACACAGTAAAACCAGTGGATCTGCATTTATTTCATCATTCATAATGCATGCTAGTTTGTTTACAATTCATAAAGCTCTTTAGCTGCCTCAGATTCACGGTTTCTGTTACAGAGGCAGTCACATGACCACGGTGGCAGTCGGA
>TU36562
TTGTCTCTATACTGAAACCTCCGTTGTCTCATAAGCATACATTATATTTTCCTATGCATCTGTATATACTCTGATTTTGGGTGAACTCTTAACTAAACTGTTTAAAAGCCAAACTGTCAGACAAATAACACATACATACTGACCTACAAATAAATGTGCTCTGTGCCCTGTTCTCTATTAACCAAGCTCTTAGGGAGAACAAGTTGTACACCTCTATATTTCACCATTTAACTATATTTGTCACCCATGAAAAACTGTTGCCCACACTCCACAGAGCCTGATCTAGAGGGGTGATTTCCGAACACTTCGAGAACAGAAAGAGCTGAACAGCAGCTATAAATGCTTAAGTGACAATCCATCTTTTTTAATGACACTTTATCAATGCATCGCACTCACTTCAGGGCCCTCATTAGTCCATTTCTCTGAGCCGTTAGAACAGCCGGTCTTGCAGGTGACAGCAGCACATTGTTACATGATGGTCTGCCTCTAAAAATATGTTGCCACGTTGGCCTTATGAAATGAAGCAAAAACTGTACATCATTATTAGTAAAAGAGATCAGAATATATGGCCATCATCACATTGTTCTTAAAAAGCATTCCACCTGCTCTAATAGTGCCCAACTTGAGCCCAATTTCAAAGGACTGTCACTTCTCTTTGAAGTTGTGACTAAATATTTGCTGACATTGAGGGAGCGTGTGTCCTTTTTGGAGTGTTTGCTCGCTAGTTTCCACTGAACTGCCCTTCTTCAGAGAGCATGTACACGTGTGCCTGGCCTGCTGCCCTTAGATAAAGAACAGAGAGTGTTAGTGAGGGGGGAGGGAAATCAAAGGGGAAAAGTGATAAGAGTAAAAAATGGGTTGGAATGGAAGAATGTGATGGTTAAACGAGTTCAGATGCAAGATACAACTGTACAGAATAAGGTAAATGTTCACATAACAGCTTGTCTTTTTGCATAATGTGCATGTCATGAAAACAAATACTCACAGGCTGCATGTGCCGGTTGCATCCGGGAGCCCCTTAAAGGATGTTTAACCTGTAACACTGCATTTAATGCTGAAATATGAGTTGTGGGATTAGGAGTGTGTGCTGAAATCCATACCTCTGTAACCATGAAGTACAACATGTCCCGTTATAGAGGTGAGAGACCACTTTACGAAGGAATTCAGTCCAGTTTGAAACCTCCAACAGAGCGTATGGATAGCTGATACACTGCCTCTTCACTGTAAAAGAGGAAGCACATGACACTTGAACAGGAGGGTGGAAATATTTAGAGAACTGTTCTGCAAATTTGGATAATGCCTTCCTGGAGAAGCTGAAAAGCTAACTTGTTAAGTTTGTGTTTGCCAATAAGAAATAAAAACAGAAACACAGTAAAACCAGTGGATCTGCATTTATTTCATCATTCATAATGCATGCTAGTTTGTTTACAATTCATAAAGCTCTTTAGCTGCCTCAGATTCACGGTTTCTGTTACAGAGGCAGTCACATGACCACGGTGGCAGTCGGA
>TU36556
TTGTCTCTATACTGAAACCTCCGTTGTCTCATAAGCATACATTATATTTTCCTATGCATCTGTATATACTCTGATTTTGGGTGAACTCTTAACTAAACTGTTTAAAAGCCAAACTGTCAGACAAATAACACATACATACTGACCTACAAATAAATGTGCTCTGTGCCCTGTTCTCTATTAACCAAGCTCTTAGGGAGAACAAGTTGTACACCTCTATATTTCACCATTTAACTATATTTGTCACCCATGAAAAACTGTTGCCCACACTCCACAGAGCCTGATCTAGAGGGGTGATTTCCGAACACTTCGAGAACAGAAAGAGCTGAACAGCAGCTATAAATGCTTAAGTGACAATCCATCTTTTTTAATGACACTTTATCAATGCATCGCACTCACTTCAGGGCCCTCATTAGTCCATTTCTCTGAGCCGTTAGAACAGCCGGTCTTGCAGGTGACAGCAGCACATTGTTACATGATGGTCTGCCTCTAAAAATATGTTGCCACGTTGGCCTTATGAAATGAAGCAAAAACTGTACATCATTATTAGTAAAAGAGATCAGAATATATGGCCATCATCACATTGTTCTTAAAAAGCATTCCACCTGCTCTAATAGTGCCCAACTTGAGCCCAATTTCAAAGGACTGTCACTTCTCTTTGAAGTTGTGACTAAATATTTGCTGACATTGAGGGAGCGTGTGTCCTTTTTGGAGTGTTTGCTCGCTAGTTTCCACTGAACTGCCCTTCTTCAGAGAGCATGTACACGTGTGCCTGGCCTGCTGCCCTTAGATAAAGAACAGAGAGTGTTAGTGAGGGGGGAGGGAAATCAAAGGGGAAAAGTGATAAGAGTAAAAAATGGGTTGGAATGGAAGAATGTGATGGTTAAACGAGTTCAGATGCAAGATACAACTGTACAGAATAAGGTAAATGTTCACATAACAGCTTGTCTTTTTGCATAATGTGCATGTCATGAAAACAAATACTCACAGGCTGCATGTGCCGGTTGCATCCGGGAGCCCCTTAAAGGATGTTTAACCTGTAACACTGCATTTAATGCTGAAATATGAGTTGTGGGATTAGGAGTGTGTGCTGAAATCCATACCTCTGTAACCATGAAGTACAACATGTCCCGTTATAGAGGTGAGAGACCACTTTACGAAGGAATTCAGTCCAGTTTGAAAC
>TU36557
GGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTTATTGATCATTTTTTATTATCAACAATGTTGAAAACAGTTGTTTAATATTTTTGTGGAAACCACAATAAATTTTTTCAGGACCTCTTTGATGAATAGAAAGTTCAAAAGAAAAGCATTTATTAGAAAATGAAATCATTTGTAACATTATTCATTTTCTTCATTGTCAAGTGAATTTCATTCAAAAAAAACATACTAAACGCAAATTTTCAAACAGTATATAAAACATATTTAATTAAAAAAAACAAAACACAATATATTTGCTACAAATATAATTTATATTTTATAAATATAAAATAATTTGTCTCTATACTGAAACCTCCGTTGTCTCATAAGCATACATTATATTTTCCTATGCATCTGTATATACTCTGATTTTGGGTGAACTCTTAACTAAACTGTTTAAAAGCCAAACTGTCAGACAAATAACACATACATACTGACCTACAAATAAATGTGCTCTGTGCCCTGTTCTCTATTAACCAAGCTCTTAGGGAGAACAAGTTGTACACCTCTATATTTCACCATTTAACTATATTTGTCACCCATGAAAAACTGTTGCCCACACTCCACAGAGCCTGATCTAGAGGGGTGATTTCCGAACACTTCGAGAACAGAAAGAGCTGAACAGCAGCTATAAATGCTTAAGTGACAATCCATCTTTTTTAATGACACTTTATCAATGCATCGCACTCACTTCAGGGCCCTCATTAGTCCATTTCTCTGAGCCGTTAGAACAGCCGGTCTTGCAGGTGACAGCAGCACATTGTTACATGATGGTCTGCCTCTAAAAATATGTTGCCACGTTGGCCTTATGAAATGAAGCAAAAACTGTACATCATTATTAGTAAAAGAGATCAGAATATATGGCCATCATCACATTGTTCTTAAAAAGCATTCCACCTGCTCTAATAGTGCCCAACTTGAGCCCAATTTCAAAGGACTGTCACTTCTCTTTGAAGTTGTGACTAAATATTTGCTGACATTGAGGGAGCGTGTGTCCTTTTTGGAGTGTTTGCTCGCTAGTTTCCACTGAACTGCCCTTCTTCAGAGAGCATGTACACGTGTGCCTGGCCTGCTGCCCTTAGATAAAGAACAGAGAGTGTTAGTGAGGGGGGAGGGAAATCAAAGGGGAAAAGTGATAAGAGTAAAAAATGGGTTGGAATGGAAGAATGTGATGGTTAAACGAGTTCAGATGCAAGATACAACTGTACAGAATAAGGTAAATGTTCACATAACAGCTTGTCTTTTTGCATAATGTGCATGTCATGAAAACAAATACTCACAGGCTGCATGTGCCGGTTGCATCCGGGAGCCCCTTAAAGGATGTTTAACCTGTAACACTGCATTTAATGCTGAAATATGAGTTGTGGGATTAGGAGTGTGTGCTGAAATCCATACCTCTGTAACCATGAAGTACAACATGTCCCGTTATAGAGGTGAGAGACCACTTTACGAAGGAATTCAGTCCAGTTTGAAAC
>TU36558
TTGTCTCTATACTGAAACCTCCGTTGTCTCATAAGCATACATTATATTTTCCTATGCATCTGTATATACTCTGATTTTGGGTGAACTCTTAACTAAACTGTTTAAAAGCCAAACTGTCAGACAAATAACACATACATACTGACCTACAAATAAATGTGCTCTGTGCCCTGTTCTCTATTAACCAAGCTCTTAGGGAGAACAAGTTGTACACCTCTATATTTCACCATTTAACTATATTTGTCACCCATGAAAAACTGTTGCCCACACTCCACAGAGCCTGATCTAGAGGGGTGATTTCCGAACACTTCGAGAACAGAAAGAGCTGAACAGCAGCTATAAATGCTTAAGTGACAATCCATCTTTTTTAATGACACTTTATCAATGCATCGCACTCACTTCAGGGCCCTCATTAGTCCATTTCTCTGAGCCGTTAGAACAGCCGGTCTTGCAGGTGACAGCAGCACATTGTTACATGATGGTCTGCCTCTAAAAATATGTTGCCACGTTGGCCTTATGAAATGAAGCAAAAACTGTACATCATTATTAGTAAAAGAGATCAGAATATATGGCCATCATCACATTGTTCTTAAAAAGCATTCCACCTGCTCTAATAGTGCCCAACTTGAGCCCAATTTCAAAGGACTGTCACTTCTCTTTGAAGTTGTGACTAAATATTTGCTGACATTGAGGGAGCGTGTGTCCTTTTTGGAGTGTTTGCTCGCTAGTTTCCACTGAACTGCCCTTCTTCAGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU36563 False 628 lncRNA 0.44 2 11951571 11952608
TU36555 False 1763 lncRNA 0.38 1 11953413 11955175
TU36562 False 1508 lncRNA 0.35 1 11953413 11954920
TU36556 False 1180 lncRNA 0.40 1 11953741 11954920
TU36557 False 1547 lncRNA 0.34 1 11953741 11955287
TU36558 True 753 lncRNA 0.50 1 11954168 11954920

Neighbor

gene id symbol gene type direction distance location
CI01000004_11944095_11946749 NA coding downstream 4555 11943785 ~ 11947016 (-)
CI01000004_11930044_11933982 NA coding downstream 17415 11929840 ~ 11934156 (-)
CI01000004_11826038_11848540 AMPH coding downstream 103031 11824907 ~ 11848540 (-)
CI01000004_11789063_11823381 NA coding downstream 126831 11788496 ~ 11824740 (-)
CI01000004_11768937_11770193 NA coding downstream 181143 11768641 ~ 11770428 (-)
CI01000004_11974708_11980518 NA coding upstream 19357 11974644 ~ 11982295 (-)
CI01000004_12025107_12032154 NA coding upstream 69820 12025107 ~ 12032952 (-)
CI01000004_12048597_12107143 ASAP1, ASAP1A coding upstream 92032 12047319 ~ 12108201 (-)
CI01000004_12111607_12123001 UBTFL, UBF1 coding upstream 155605 12110892 ~ 12123318 (-)
CI01000004_12127993_12144790 SLC4A2A, SLC4A2 coding upstream 171313 12126600 ~ 12144790 (-)
G32224 NA non-coding downstream 267 11950991 ~ 11951304 (-)
G32222 NA non-coding downstream 3615 11947663 ~ 11947956 (-)
G32195 NA non-coding downstream 44143 11900123 ~ 11907428 (-)
G32174 NA non-coding downstream 58598 11892732 ~ 11892973 (-)
G32163 NA non-coding downstream 107309 11842652 ~ 11844262 (-)
G32228 NA non-coding upstream 4072 11959359 ~ 11959798 (-)
G32229 NA non-coding upstream 4628 11959915 ~ 11960172 (-)
G32230 NA non-coding upstream 5085 11960372 ~ 11960609 (-)
G32231 NA non-coding upstream 5892 11961179 ~ 11961378 (-)
G32237 NA non-coding upstream 29930 11985217 ~ 11985428 (-)
G32150 NA other downstream 170620 11776519 ~ 11780951 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other downstream 538664 11406957 ~ 11412907 (-)
G31203 NA other downstream 1200930 10746437 ~ 10750641 (-)
G30316 NA other downstream 2544650 9377937 ~ 9406921 (-)
G29746 NA other downstream 3593444 8354498 ~ 8358127 (-)
G32207 NA other upstream 420881 12376168 ~ 12384780 (-)
CI01000004_14543631_14551256 NA other upstream 2595513 14541515 ~ 14551352 (-)
G33746 NA other upstream 2613506 14568793 ~ 14569264 (-)
G33750 NA other upstream 2623171 14578458 ~ 14579001 (-)
G33755 NA other upstream 2626119 14581406 ~ 14581873 (-)

Expression


Co-expression Network