G31763


Basic Information

Item Value
gene id G31763
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12050825 ~ 12051571 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36006
TTAGGTTTGACTGTATATAACACTCTCTAAAATGTCTTTCACTCACTACTGTGTTTATTTTCCGTGGCATTGGGACAGGCATCTCCACAGCTCCTGCAGGTGCACCATTAGTGTCCTCACTGGCCTGTCTGGGAGAGAGCTCCTCCTGCTGACTGAATGACTGCACCTCTGTCAGCTGGGGCTTCGGGCTGGTTTCCTCCTGTGTCGTTTGCCTCTGTGTGGACTCAGCAGCTGAAGACATCGAAGGCTTGGATGGGAGGTCAGAGAGCTGCGGCTTAGGGGGAAGATCCTTAAGCTGTGGTTTCGGGGGCAGGTCAGAAAGCTGAGGTTTTGGCGGTAAATCCGACAATTGTGGTTTCGGGGGAAGATCAGACAGTTGCGGCTTAGGGGGAAGGTCTGAGATGTGTGGTTTCTGCGGCACCTCCAGGGGCTGGGAGCGTTCTGCAGGTTGCGGGATTTTAGGTGGCGGCTCAGTGGGTCTGGTTATTGTATCTGAAGCTCTGGTGGGAGGTGTGTCCTGGGCCTGTGGAGGTTTCTGCAGCACATCGGGACCAGACTTGTCCATTGAGGGGAGGTGGATTGTGTCAATCTTTCGTAGTGCCACTGAAAGAGTAGTTTGGGAAGAACTCGTGGACCAAACGCCGCTTTTGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU36006 True 653 lncRNA 0.54 2 12050825 12051571

Neighbor

gene id symbol gene type direction distance location
CI01000004_12033980_12034384 NA coding upstream 16423 12033656 ~ 12034402 (+)
CI01000004_11897082_11898506 MYCB coding upstream 151610 11896232 ~ 11899215 (+)
CI01000004_11863724_11890961 NA coding upstream 159711 11863724 ~ 11891114 (+)
CI01000004_11776595_11786233 STARD3NL coding upstream 263908 11776419 ~ 11786917 (+)
CI01000004_11771176_11773391 EPDR1 coding upstream 277309 11771089 ~ 11773516 (+)
CI01000004_12222833_12223126 NA coding downstream 170355 12221926 ~ 12223244 (+)
CI01000004_12331486_12332789 NA coding downstream 279269 12330840 ~ 12332997 (+)
CI01000004_12353073_12362622 KLHL18 coding downstream 301389 12352960 ~ 12362716 (+)
CI01000004_12362858_12363136 NA coding downstream 311236 12362807 ~ 12363136 (+)
CI01000004_12376518_12381495 NA coding downstream 324853 12376424 ~ 12381705 (+)
G31777 NA non-coding upstream 17288 12031131 ~ 12033537 (+)
G31759 NA non-coding upstream 29157 12018548 ~ 12021668 (+)
G31773 NA non-coding upstream 50114 11994896 ~ 12000711 (+)
G31769 NA non-coding upstream 95911 11953371 ~ 11954914 (+)
G31778 NA non-coding upstream 99468 11950993 ~ 11951357 (+)
G31852 NA non-coding downstream 107794 12159365 ~ 12159616 (+)
G31854 NA non-coding downstream 110787 12162358 ~ 12162817 (+)
G31805 NA non-coding downstream 118750 12170321 ~ 12170649 (+)
G31790 NA non-coding downstream 126329 12177900 ~ 12179820 (+)
G31789 NA non-coding downstream 128320 12179891 ~ 12182005 (+)
CI01000004_11666900_11667179 NA other upstream 383166 11666900 ~ 11667659 (+)
G31710 NA other upstream 408425 11637251 ~ 11642400 (+)
G30797 NA other upstream 1553037 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3069841 8976254 ~ 8980984 (+)
G28859 NA other upstream 3451222 8599235 ~ 8599603 (+)
G31865 NA other downstream 140559 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 591183 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1971976 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 3039673 15091200 ~ 15097173 (+)
G34220 NA other downstream 3887786 15939357 ~ 15939950 (+)

Expression


Co-expression Network