G31881


Basic Information

Item Value
gene id G31881
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 12269833 ~ 12270489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU36141
GAAAAATACAGTAGAGCTGTGTGAAACTGTAAGCTATTTTATAGGCATTCAAGACAATCAAGATCCTTCTGTGAGAGTGAGTAGACACTTACTGTAGCCTTATTTTGGATTTTACAGTCTTTCTGATGGACAAACGGTTTTGTTTTGTCACATGTGGTGGGTTTTAATAACACATTAAGCATGCGCTTGTCATAATCCTGTCATATAGGGGAAAGACACAGGTAAAGCATAAAGATGACAACCATACATTTAGGAAATGTTTAAATATTTTTATCGAGCTCTTTAAGGCTGATGCATAAGCACAGAAAACAAACAATCAAAACAGACAAATTACAGTAAAATGTAAAAAGGTTTAACATTTGAATTAAATAACTTACAGAATTTAAAATGGAGGCAAAATCAAGGTGTTTGGCTTTTCCATGTCTCTCATTGGCCAATTTTATTGCCTTGTCAATAATGATGTTTGTCTCAGGTTGGCCTAGTTGATATTCTTTCTTTCCGTCTGTGGACTCCAGCAGTAACAGAGCGCTAAGCAGTAACAGTGAACCTCTCATCTTGCACAATAACTGAAGTTCTTCACAGTTTGCCTGATCTGGTCAGAAGCAGTAACTGGTGTCACGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU36141 True 621 lncRNA 0.37 2 12269833 12270489

Neighbor

gene id symbol gene type direction distance location
CI01000004_12222833_12223126 NA coding upstream 46589 12221926 ~ 12223244 (+)
CI01000004_12033980_12034384 NA coding upstream 235431 12033656 ~ 12034402 (+)
CI01000004_11897082_11898506 MYCB coding upstream 370618 11896232 ~ 11899215 (+)
CI01000004_11863724_11890961 NA coding upstream 378719 11863724 ~ 11891114 (+)
CI01000004_11776595_11786233 STARD3NL coding upstream 482916 11776419 ~ 11786917 (+)
CI01000004_12331486_12332789 NA coding downstream 60351 12330840 ~ 12332997 (+)
CI01000004_12353073_12362622 KLHL18 coding downstream 82471 12352960 ~ 12362716 (+)
CI01000004_12362858_12363136 NA coding downstream 92318 12362807 ~ 12363136 (+)
CI01000004_12376518_12381495 NA coding downstream 105935 12376424 ~ 12381705 (+)
CI01000004_12390372_12391923 CCR9A coding downstream 119883 12390372 ~ 12392180 (+)
G31862 NA non-coding upstream 12692 12220661 ~ 12257141 (+)
G31865 NA non-coding upstream 72415 12192130 ~ 12197418 (+)
G31887 NA non-coding upstream 81138 12188353 ~ 12188695 (+)
G31886 NA non-coding upstream 83439 12186024 ~ 12186394 (+)
G31885 NA non-coding upstream 85080 12184284 ~ 12184753 (+)
G31863 NA non-coding downstream 8391 12278880 ~ 12297009 (+)
G31874 NA non-coding downstream 32130 12302619 ~ 12304869 (+)
G31930 NA non-coding downstream 80793 12351282 ~ 12351482 (+)
G31939 NA non-coding downstream 125902 12396391 ~ 12396626 (+)
G31952 NA non-coding downstream 192041 12462530 ~ 12463374 (+)
CI01000004_11666900_11667179 NA other upstream 602174 11666900 ~ 11667659 (+)
G31710 NA other upstream 627433 11637251 ~ 11642400 (+)
G30797 NA other upstream 1772045 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 3288849 8976254 ~ 8980984 (+)
CI01000004_12646972_12652534 NA other downstream 372265 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 1753058 14035393 ~ 14039142 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 2820755 15091200 ~ 15097173 (+)
G34220 NA other downstream 3668868 15939357 ~ 15939950 (+)
G33815 NA other downstream 3792926 16063415 ~ 16066464 (+)

Expression


Co-expression Network