Gene
RNA
| Item | Value |
|---|---|
| gene id | G32264 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 12419432 ~ 12419839 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: pyrroline-5-carboxylate reductase 3 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU36604 | True | 408 | lncRNA | 0.31 | 1 | 12419432 | 12419839 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_12404227_12411145 | PRPF4BA | coding | downstream | 7767 | 12403532 ~ 12411665 (-) |
| CI01000004_12364142_12368537 | BFSP2 | coding | downstream | 50760 | 12364035 ~ 12368672 (-) |
| CI01000004_12345221_12345884 | NA | coding | downstream | 73123 | 12344810 ~ 12346309 (-) |
| CI01000004_12315924_12323953 | NRBP2, NRBP2A | coding | downstream | 95479 | 12314745 ~ 12323953 (-) |
| CI01000004_12279303_12308271 | PUF60, PUF60A | coding | downstream | 111161 | 12278894 ~ 12308271 (-) |
| CI01000004_12550061_12550882 | NA | coding | upstream | 130047 | 12549886 ~ 12550931 (-) |
| CI01000004_12574165_12577698 | NA | coding | upstream | 154246 | 12574085 ~ 12580179 (-) |
| CI01000004_12748162_12752913 | NA | coding | upstream | 328100 | 12747939 ~ 12753275 (-) |
| CI01000004_12781663_12809789 | NA | coding | upstream | 361686 | 12781525 ~ 12809789 (-) |
| CI01000004_12823734_12925962 | B4GALT2 | coding | upstream | 403895 | 12823734 ~ 12925962 (-) |
| G32261 | NA | non-coding | downstream | 66981 | 12352019 ~ 12352451 (-) |
| G32200 | NA | non-coding | downstream | 132652 | 12282650 ~ 12286780 (-) |
| G32258 | NA | non-coding | downstream | 222304 | 12196373 ~ 12197128 (-) |
| G32177 | NA | non-coding | downstream | 239608 | 12177943 ~ 12179824 (-) |
| G32266 | NA | non-coding | upstream | 3750 | 12423589 ~ 12423850 (-) |
| G32267 | NA | non-coding | upstream | 4322 | 12424161 ~ 12424469 (-) |
| G32276 | NA | non-coding | upstream | 39761 | 12459600 ~ 12459828 (-) |
| G32278 | NA | non-coding | upstream | 40639 | 12460478 ~ 12462341 (-) |
| G32281 | NA | non-coding | upstream | 47280 | 12467119 ~ 12467329 (-) |
| G32207 | NA | other | downstream | 34652 | 12376168 ~ 12384780 (-) |
| G32150 | NA | other | downstream | 638481 | 11776519 ~ 11780951 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | downstream | 1006525 | 11406957 ~ 11412907 (-) |
| G31203 | NA | other | downstream | 1668791 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 3012511 | 9377937 ~ 9406921 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 2130961 | 14541515 ~ 14551352 (-) |
| G33746 | NA | other | upstream | 2148954 | 14568793 ~ 14569264 (-) |
| G33750 | NA | other | upstream | 2158619 | 14578458 ~ 14579001 (-) |
| G33755 | NA | other | upstream | 2161567 | 14581406 ~ 14581873 (-) |
| G33756 | NA | other | upstream | 2165332 | 14585171 ~ 14585745 (-) |
