Gene
RNA
| Item | Value |
|---|---|
| gene id | G33029 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 13540593 ~ 13543079 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU37439 | True | 2073 | lncRNA | 0.36 | 2 | 13540593 | 13543079 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_13467845_13475703 | NA | coding | upstream | 64389 | 13467845 ~ 13476204 (+) |
| CI01000004_13211489_13233786 | DARS2 | coding | upstream | 306399 | 13211489 ~ 13234194 (+) |
| CI01000004_13197104_13205895 | KLHL20 | coding | upstream | 334008 | 13197104 ~ 13206585 (+) |
| CI01000004_13062721_13076100 | KIF2C | coding | upstream | 464365 | 13062721 ~ 13076228 (+) |
| CI01000004_13043279_13051835 | NA | coding | upstream | 488629 | 13043237 ~ 13051964 (+) |
| CI01000004_13708254_13713625 | NA | coding | downstream | 164808 | 13707887 ~ 13714179 (+) |
| CI01000004_13785437_13800307 | RFWD2.L, RFWD2 | coding | downstream | 241737 | 13784816 ~ 13800307 (+) |
| CI01000004_13959453_14004808 | TNR | coding | downstream | 416374 | 13959453 ~ 14004808 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | coding | downstream | 492314 | 14035393 ~ 14039142 (+) |
| CI01000004_14099120_14100390 | MRPS14 | coding | downstream | 555815 | 14098894 ~ 14100622 (+) |
| G32927 | NA | non-coding | upstream | 209209 | 13331184 ~ 13331384 (+) |
| G32926 | NA | non-coding | upstream | 211043 | 13329314 ~ 13329550 (+) |
| G32894 | NA | non-coding | upstream | 283371 | 13256930 ~ 13257222 (+) |
| G32599 | NA | non-coding | upstream | 307642 | 13231587 ~ 13232951 (+) |
| G32595 | NA | non-coding | upstream | 346571 | 13193719 ~ 13194022 (+) |
| G32961 | NA | non-coding | downstream | 97478 | 13640557 ~ 13666445 (+) |
| G32959 | NA | non-coding | downstream | 107979 | 13651058 ~ 13752853 (+) |
| G33077 | NA | non-coding | downstream | 235687 | 13778766 ~ 13779068 (+) |
| G33086 | NA | non-coding | downstream | 282901 | 13825980 ~ 13826207 (+) |
| CI01000004_12646972_12652534 | NA | other | upstream | 884882 | 12646838 ~ 12652570 (+) |
| G31865 | NA | other | upstream | 1345446 | 12192130 ~ 12197418 (+) |
| CI01000004_11666900_11667179 | NA | other | upstream | 1872934 | 11666900 ~ 11667659 (+) |
| G31710 | NA | other | upstream | 1898193 | 11637251 ~ 11642400 (+) |
| G30797 | NA | other | upstream | 3042805 | 10497376 ~ 10497788 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | downstream | 1548165 | 15091200 ~ 15097173 (+) |
| G34220 | NA | other | downstream | 2396278 | 15939357 ~ 15939950 (+) |
| G33815 | NA | other | downstream | 2520336 | 16063415 ~ 16066464 (+) |
| G34400 | NA | other | downstream | 3434249 | 16971995 ~ 17025976 (+) |
