G33150


Basic Information

Item Value
gene id G33150
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 14164219 ~ 14201867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU37586
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAGGGGAGAAATTTGTAAGTGCACCTTGAAATTGATCAAATTTTAAGCCTAACCTCTCCATTAACTCCATTAGCATTTGCAGGTGAAATGGAAAAACATTAAATCATGCTTCTCACTAACTGAGTAAACACCTTTTCCTCTTTTAGATTCACTTCCCCCTTCTCGCTTTCCAACTTATCGCTCAAAACTTCCTATCACCATTAACATAAATGCTAATTAGCTAGCAATGAAATGAAAATGCATAAATTTGGTACAGTGCTAAACCAAGCGAAAATGTTCCCTTTGAGCTCATAGCTCCACACTGGCTCTGATAAAGTAATTATTGCTTTCGGCTCCTGTGATTCAGATCCCTGGGTTTGCATGGAGTTTGTGTCAACAAACCACAGGGTCTCAGCAGGAGTTTGACACCCTTCCTAAGTCCAGCCATTCCAACTTTTTCCTCCATTCCCTTAGAAATGTAGGAAGCAGCTCACTCGCCTCCTTTTGTATGCTAATACATGTTCCTGCAAAGATACAAAGACAGTGGGCTTGCCACCTTTTAGCCTTATTACCCTTTGAAAGGCTGGAGCAGAGGTGGTCCACAGAAATCATGAGAAAGGACCCCGTGGAATGGATTTTTTTTTTTAGTGAAAGAGAAAGAACTCTACCTTCAATAAAGCCAATTTCCGTGTTAAAGTGGAATGTAGAAAGTGCTTTCTGACACATTAGTAAACACAGTCCTCATTTAGGTCTTCTCGTCATGGGCTGGTATCTCCAGGAATGCCCCAGCCTGACAGAAACACAGTGGGTGGTGAGAGCAGATAGTCTTAGACCTGCAGCTGAAAATGGGGCACTGCTGAATTTGCAATCCCAGTGTCGTGCTTGAGATAACTTTGTTCTGCCGTGTAGATATTCCCCTAAGAGTTGGCACTCAAACCTTTGTCGTTCTGTGTCTTAAGAATGAGAGCAAGGAACGGTAAAGGAGCAGGAACAGTAAAGTCACTCAATCCTTTAGGGTGCAAAATGCTGCCAATGAAGAATAAACTGGCTTAAATACAGAGAGGGACTGGTAATATTTATTTTTTTATTTTTTAACACATTTTTACTTTTGCTGGATCTCCCCAACAATGCCAGGAAAAAACATTGGTCCGAATGCAATGATTGGACGAAAATTTTTGGTCCTGAGACTTCAACAGAAGATGTATGTACATTTCTTTAATATTTAGACCATTGATGTGAAGAGAGTTTTAACCACTATAACAAAGTGTTAAAATTTCTCATTGGTTCATTGGTCGCTCTTGAGTTCATTGGTCTTTTGTACAGATATGAGTGTGCTGGAGTGGCGCCGACATGCTGTTGACCGCCAATATGTTAAAAAAGGATATGGTTATCCACCTCTTCATGTAATCAAGATCGAAATTACATTCATTGTAATCATGTCTCCTTTTGTACGATTCTTTTCATCTTCAAAATGCTGTTGTACTAGACACACAGCAACGATTTATCAGAAACCTAGACAAGTGTCATGATAAAAATCCTAATTCTGTTAGACTAAATGTCACTTCTTAACTGCAGGGCTCCAGACTAACATTTGAGAGCAGTAGCTCTGGTGCCACTAAGTTCTACAGATGGTGGCACCAGCACCTGATTTGGTGGTGCTGGGGGGATTGTTAATCATAAAGTTCGTTTTAATCATATAATTATTATAGTTTTGGATTAATAAGTGCAGTTACTAATAATATTGTTTGTTTATTGGAAATTTGACAGTAAAACACTGAGATTGAATTGACAAAAGTACCGACTTAGATACCAATTTGGTGCTGAAATTTTAAAAATGTGATGCTTGAGTGCTGTTGAGCGGATTCATAAACACCTCTGATTGACCATTGTGTTCACGCGCTCAACATATATGTCTGTGATTGGCTACAATGATTAACCCACGGGAGTGTTTGAAAGCACATGGAAGTGTTTGAATTTGAAAGCGGGAGTGTTTGAAAGAAGGCGTCTATCAGTGGACCGGTGTGTATCTGTGTAAGCGCTCGGTGAAGAGCGTCATTGATGTCTATTTACAAGCTGTTTTTGAAACATTGATCATTGTAGCCAATCACAGACACATCTGATGAGCGTGTGAACACAGTGGCCAATTGGACGAACATTTTTTGGTCCTGAGACTTTAACAGAAGATATATGTACATTTCTTTAATATTTAGACCACTTCTATTATTGATTGCTGTCAGGATGTGAAGAGAGTTATTGCTGTGAGCATGTAAGACATGCTGCTGCTGCACATGCAACATACATAAAATAATACCTGTAGCAGATCTATACAGGTGGAGCTGGGGAAGGTGGAGGGTTTCTGAAAGCGCACTGCAGACAGCAACACTACCAGTATTTGAATGTTGAGCCGCAGCTTATTGGCCGCAGATGCATCAGCATCCAATCAGATGCGCTATGCAGAGGACGATGCAATTGCCATTTATTTTATTTTAACGTATCCATTCCTTAAGTGAGAAAAGACAGGATAAAAAAATGACTATTTAGATTGCAAAACAGACTTTTATTATTATTAGTTTTATTATTATTAAATGTTATAGCACTAATAATAATAATAATAATAATAATAATTAATAATAATAATAATTAATAATAATAATAATAATAAATAATAATAATGGTCTAGAGATGATGATTATGATTGTTGAGGTTGTTTAAGCATTTATAATGCATATGTATTGTTATCTTATTTATTGTTGTAAAAGAATTTTGTTAAAACAATATCACCGTACCATAAAACAGTAGTGGTCAATGTCTAGGCTTGAAGCACATGCACAGGCGGTGAGTTTATGTAGGAGTGGGGGATATAAGGAGAGAGATGCAAATGTTCCAGGCATGCTGACTGCAACCTATTTAAATATGTAACAATGTCTCCGTGGCGGAGTGTCGCACTTGTGAGGTGAACAAAAGCGTGTGCGCTCAGTGCCCTGACTCAAGCACTGCCTCTCTGTAACAATGGAGGAGAGGAATACCAGCATTGCTAATTATTTAACATGACAGATGTCGGACTGTGAGAAATGCGTGACCTCCTTGTGCGACGTTAACGTTTGAAGAGCGTAAAACAACACGTAGCCGTGACAAATGTGCTAATTTCACACAAATTTAAAGAAGTGAAATTGATTTTCTTCTTCACTGTTTTTTTTAAAAAGACATTCCAGTACTTGCAGAGTCAAGTTTGGCAAATGTCAAATTAAACACAGGCTGAATTTCACAATAACGCAAGTGATTCCCATTCAAATGAAGTCAAAATGTTATTAATAATTAGATTCAATTCATGGGGTCTAGTGTCCTAACACTGACTGTAACTCATCCCTCAACATGCACATATTTAGAGGGGCTCAGCTGGGCGGAGCGCATGTTTTGTAGGCGTCTTTTCTAAGCTTTTTCAGGGAGTCACAACTGACTGAACAAATCAAGCCTTTCAGATTTTAAGAGGAAGATGTTTGAGCGTGCAGATTAAAGGGCAAAGGGACGATAGCGTGTCGTCTCTGAGTTGCTTCACTAGAGTGGCACAATGGTAAAAGGCTTGTGACGCTGATGCTGTGAATTATGAATGACACGAAGCACTCTCCTGTCACTGCGATGGCACAAACCCACAAGCTCCATTCTGCTCTTTGGAAGCATTTTGTGCAATTTTGCTTTAAGGAAGTGACCCGAAAGGGCACCTTTTATATTTCTAAACAAAGTTAAGGTTCATTTAAAGAGAAAGTGAATCCATTTAACAGCAGGAGTTCTTTGGGCAAGTTTGACTCTAGCATGGCCCAGAATTATAATATAATATAATATAATATAATATAATATAATATAATATTTAGTGCTGTCAAATGATTAATCGTGATTAATCACATCCAAAATAAATAGTTTGTGTTTACATATGTGTGTGTACTGTGCATATTTATTATGTATACATAAATACACACGCATACATGTATTTAAGAAATATTTACATGTATGTTTATATTTAAATATAATTTATATTATATATAAATAAGTATATTATATAAATATAACATTTGTTAAATATATACATTATGTTATAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37586 True 4120 lncRNA 0.37 2 14164219 14201867

Neighbor

gene id symbol gene type direction distance location
CI01000004_14105873_14111615 PLK3 coding upstream 51514 14105471 ~ 14112705 (+)
CI01000004_14104283_14104432 NA coding upstream 59534 14104283 ~ 14104685 (+)
CI01000004_14101510_14102532 CACYBP coding upstream 60992 14101510 ~ 14103227 (+)
CI01000004_14099120_14100390 MRPS14 coding upstream 63597 14098894 ~ 14100622 (+)
CI01000004_14036114_14036449 KIAA0040 coding upstream 127630 14035393 ~ 14039142 (+)
CI01000004_14266999_14280382 DHX9 coding downstream 65132 14266999 ~ 14280609 (+)
CI01000004_14283392_14361256 LAMC1 coding downstream 80269 14282136 ~ 14363133 (+)
CI01000004_14371097_14380914 NA coding downstream 168194 14370061 ~ 14380914 (+)
CI01000004_14412728_14424282 SMG7 coding downstream 210861 14412728 ~ 14424866 (+)
CI01000004_14448323_14458776 NA coding downstream 244638 14446505 ~ 14459181 (+)
G33163 NA non-coding upstream 8457 14155491 ~ 14155762 (+)
G33137 NA non-coding upstream 50731 14112989 ~ 14113488 (+)
G33122 NA non-coding upstream 116735 14046584 ~ 14047484 (+)
G33086 NA non-coding upstream 338012 13825980 ~ 13826207 (+)
G33149 NA non-coding downstream 67020 14268887 ~ 14358978 (+)
G33180 NA non-coding downstream 163452 14365319 ~ 14365540 (+)
G33181 NA non-coding downstream 164372 14366239 ~ 14366447 (+)
G33108 NA non-coding downstream 229124 14430991 ~ 14431234 (+)
G33096 NA non-coding downstream 261339 14463206 ~ 14473902 (+)
CI01000004_12646972_12652534 NA other upstream 1508508 12646838 ~ 12652570 (+)
G31865 NA other upstream 1969072 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 2496560 11666900 ~ 11667659 (+)
G31710 NA other upstream 2521819 11637251 ~ 11642400 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other downstream 889377 15091200 ~ 15097173 (+)
G34220 NA other downstream 1737490 15939357 ~ 15939950 (+)
G33815 NA other downstream 1861548 16063415 ~ 16066464 (+)
G34400 NA other downstream 2775461 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G139781 NA unknown NC_047602.1 CM018548.1 27428727 ~ 27429477 (+)
tiger barb (Puntius tetrazona) G111860 NA non-coding NC_056714.1 CM032083.1 12557811 ~ 12611994 (-)