Gene
RNA
| Item | Value |
|---|---|
| gene id | G33650 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 14527408 ~ 14527627 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU38131 | True | 220 | lncRNA | 0.31 | 1 | 14527408 | 14527627 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_14425486_14425711 | NA | coding | downstream | 101697 | 14424179 ~ 14426902 (-) |
| CI01000004_14389315_14396492 | NMNAT2 | coding | downstream | 130916 | 14389035 ~ 14396492 (-) |
| CI01000004_14115087_14115790 | TCTEX1D4 | coding | downstream | 411618 | 14115005 ~ 14115790 (-) |
| CI01000004_14041671_14073418 | TNW, TNN | coding | downstream | 453638 | 14041076 ~ 14073770 (-) |
| CI01000004_13720679_13777075 | PAPPA2 | coding | downstream | 750333 | 13720457 ~ 13777075 (-) |
| CI01000004_14543631_14551256 | NA | coding | upstream | 13888 | 14541515 ~ 14551352 (-) |
| CI01000004_14557340_14560918 | TRAC | coding | upstream | 29654 | 14557281 ~ 14561042 (-) |
| CI01000004_14563131_14563558 | NA | coding | upstream | 34442 | 14562069 ~ 14563801 (-) |
| CI01000004_14569847_14571236 | NA | coding | upstream | 42179 | 14569806 ~ 14571496 (-) |
| CI01000004_14571792_14572305 | NA | coding | upstream | 44114 | 14571741 ~ 14572426 (-) |
| G33648 | NA | non-coding | downstream | 1269 | 14525935 ~ 14526139 (-) |
| G33638 | NA | non-coding | downstream | 5830 | 14521367 ~ 14521578 (-) |
| G33633 | NA | non-coding | downstream | 27950 | 14497445 ~ 14499458 (-) |
| G33627 | NA | non-coding | downstream | 34622 | 14488845 ~ 14492786 (-) |
| G33622 | NA | non-coding | downstream | 37562 | 14486016 ~ 14489846 (-) |
| G33758 | NA | non-coding | upstream | 60971 | 14588598 ~ 14589028 (-) |
| CI01000004_14612987_14614652 | NA | non-coding | upstream | 85489 | 14612987 ~ 14614652 (-) |
| CI01000004_14618502_14618962 | NA | non-coding | upstream | 91026 | 14618156 ~ 14619037 (-) |
| G34461 | NA | non-coding | upstream | 159810 | 14687437 ~ 14693318 (-) |
| G32207 | NA | other | downstream | 2142628 | 12376168 ~ 12384780 (-) |
| G32150 | NA | other | downstream | 2746457 | 11776519 ~ 11780951 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | downstream | 3114501 | 11406957 ~ 11412907 (-) |
| G31203 | NA | other | downstream | 3776767 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 5120487 | 9377937 ~ 9406921 (-) |
| G33746 | NA | other | upstream | 41166 | 14568793 ~ 14569264 (-) |
| G33750 | NA | other | upstream | 50831 | 14578458 ~ 14579001 (-) |
| G33755 | NA | other | upstream | 53779 | 14581406 ~ 14581873 (-) |
| G33756 | NA | other | upstream | 57544 | 14585171 ~ 14585745 (-) |
