Gene
RNA
| Item | Value |
|---|---|
| gene id | G34668 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15051176 ~ 15052775 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39354 | False | 1600 | TUCP | 0.31 | 1 | 15051176 | 15052775 |
| TU39355 | True | 694 | TUCP | 0.53 | 1 | 15051176 | 15051869 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_14999971_15002640 | SLITRK3B | coding | downstream | 48536 | 14999275 ~ 15002640 (-) |
| CI01000004_14951433_14957539 | NA | coding | downstream | 93335 | 14951176 ~ 14957841 (-) |
| CI01000004_14897662_14906408 | NA | coding | downstream | 144750 | 14897250 ~ 14906426 (-) |
| CI01000004_14860344_14863053 | NA | coding | downstream | 187728 | 14860286 ~ 14863448 (-) |
| CI01000004_14846825_14850092 | NA | coding | downstream | 199645 | 14846785 ~ 14851531 (-) |
| CI01000004_15063428_15066310 | NA | coding | upstream | 10653 | 15063428 ~ 15066310 (-) |
| CI01000004_15068206_15086386 | MAP1SB | coding | upstream | 14980 | 15067755 ~ 15086519 (-) |
| CI01000004_15086759_15087492 | NA | coding | upstream | 33910 | 15086671 ~ 15087575 (-) |
| CI01000004_15159447_15160043 | DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 | coding | upstream | 106633 | 15159408 ~ 15160043 (-) |
| CI01000004_15186236_15193312 | NA | coding | upstream | 133164 | 15185939 ~ 15195460 (-) |
| G34666 | NA | non-coding | downstream | 2036 | 15048712 ~ 15049140 (-) |
| G34664 | NA | non-coding | downstream | 12266 | 15038592 ~ 15038910 (-) |
| G34663 | NA | non-coding | downstream | 18803 | 15031991 ~ 15032373 (-) |
| G34661 | NA | non-coding | downstream | 20435 | 15030445 ~ 15030741 (-) |
| G34635 | NA | non-coding | downstream | 56137 | 14980342 ~ 14995039 (-) |
| G34670 | NA | non-coding | upstream | 1088 | 15053863 ~ 15054107 (-) |
| G34673 | NA | non-coding | upstream | 3503 | 15056278 ~ 15056612 (-) |
| G34674 | NA | non-coding | upstream | 8696 | 15061471 ~ 15061797 (-) |
| G34684 | NA | non-coding | upstream | 52690 | 15105465 ~ 15105702 (-) |
| G34575 | NA | non-coding | upstream | 57206 | 15109981 ~ 15146962 (-) |
| G34632 | NA | other | downstream | 25955 | 15011361 ~ 15025221 (-) |
| CI01000004_14827536_14831360 | NA | other | downstream | 223053 | 14827496 ~ 14831526 (-) |
| CI01000004_14808034_14808645 | NA | other | downstream | 242647 | 14807938 ~ 14808969 (-) |
| CI01000004_14775109_14792782 | NA | other | downstream | 268520 | 14774282 ~ 14792784 (-) |
| G34718 | NA | other | upstream | 228241 | 15281016 ~ 15281649 (-) |
| G34633 | NA | other | upstream | 734611 | 15787386 ~ 15787897 (-) |
| CI01000004_15832789_15836192 | NA | other | upstream | 779798 | 15832573 ~ 15836231 (-) |
| G34796 | NA | other | upstream | 807838 | 15860613 ~ 15863748 (-) |
