G34032


Basic Information

Item Value
gene id G34032
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15106736 ~ 15160060 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU38575
ATGCTGCTCCAGGTTCAACAAAATATGTGACCAGTGCTGGAAAAATGAGTTGCAATGAGCCTCTTGTTATTTTCACATTCCCTATTTAAAAAACCTTCAAAATGATGTATGATGTGTTGGAATCAGTCAAAAAATGAATGAGCTACACCTCTAAATCGATAAAGTCAGCAAAGTCAATTTTGAGAAAAATCGAGTTAAAGTTTTCAGAAGGTTGCAAAACAAAATCGCCTAGCAACCACACCTTAAAATCCCTGTTAATAACACCAAATTTGGCACAAACCAAGTCAAAACCAATTATCTATAGGAAAAATAGCCTATATATTCAACTTTTTCCCCCATCGTACCACAATTGTTTGATTAACATTAATGAAACAGACAGCATATATATATATATTAAGAGCTACTGTACCGCACGGATCTAATATAATGTTACACATCAGAAGTTTTCCCCCACAGTTAGCCAGACATAACAGATAATGTTTGCGTGAATACTCGCCACAGATATTTTAAAATACTGTGTATATTGGGATCACACGCTGTGCGCGCGCTTCAGATGTGTCAGTCAGCGCGAGGAAGATTGTTTTGTTTACATCTGCATGAGTTTGAAAATCACAATTCATTGGTTCGGACTCACGCCATCGAGAATTCGCTATGAATGTTCACAAAGTTGGAATGCTGCGCTTTAAAACTATACCAAACTTGTGCTGAGGGAAGCGCCAGTCATCGAGAAGCGAGCAGAAAAAAAGAGATGGTCCTCACTGCAGAACACGAGATCCAGGGGCGGGATCCAACTCCTCCCACTTTACATATCCCTAAACCTACCCGTCTCCACCCCCTGGATCTAGATCCAACTCCTCCCACTTTACATATCCCTAAACCTACCCATCTCCACCCCCTGGATCTAGATCCAACTCCTCCCACTTTACATATCCCTAAACCTACCCATCTCCACCCC
>TU38574
TGCAGGTATATATCTATACATATATATTAGTACATGTACGCAGTATTTTCCTTCATTTGGGATGCGTGAGCACAGCATACCATGTCTTAGGAAGACTATTGCTAAAGGACATATCATACATAGTAGTCGCTAATAGCTATAATTTAAAAGAACTTTTGTAAAATATTGTACAAAACAAATGCAAAGGATTTAAGTTGAAAAGTCAATCAAATGCAAAGGATTTAAGTTGAAAAGTCACTTCACAGTTGTGTTGCTCGCCCTCATGCTGGCTAACATCAAGTGGGACCATGCGTATCTGAATTATGAAATGGAGGTCATCATTTACATACGTTTCACAGTACATTCCATTACCCTTAGGCATTTAAAGTGCTCACATGTGTAAACCAGATTTAGGATACCAGGTGAAAAATTCATGAATGAGATTTACAGAAAGTCCCCTGCGATTCCAGCCAAACACATAAACAGTGAATGAAGAGGTTTAAACAGAATTGTGTCCATGGCTCATCCGATGAGACTCAGCGATGTTTTCTTTTTACATAGTGTTAGATTCTTCTTTACATACAATTTACAAGTATTTACAATAAAAAGTGCATGATGTGGCTCACAAAATGATTTTATACATAGAACTGGTGGGCTTTGGCATTGCGGAGGCAAGTCAATGTTGTCAAGCCAACCAAAAGGATCGCAGGTAGCTGACACTCAGACTTCCCGCACATGGAAAAAGCAAGAAGCTCTGCAGTTTTCTTCTCGTGCAGCTTGATGGTATCAGCAGTGTGACTCATGCACCAGCTGAGTGGGCTTTATAGAGATTGGACACGTAGATTCAGTTATAGTGGAACTGAATACAGTCTGAACTTCTAACACAAGATGGATGAGGCGTTGTCCCCAATTTAGAAAAATCAGCAAAACTCTGCAAAGAGGGGATGAAGAGGGATTTCTTTTTTTAATCATGATATGACTGTATAAACCATGCAGAGCAGAACTACTGTCACCAGGAGGGAGGTGGTAAATTATAGCACCATTTTTAGGAGATGAATGTGCTGGTGGGGCATCCAGGGAACTAATATTAAAACTTTAATCATATACATCAGTCAGAGGAAACAAACTGTCTTAATATTAACGGATAGTAAACCGGAAACTATAAATGAAGGATGTTTTCAGTTCTATTGCAACAATGCAGGTCACATCAAGTGCAACATGTTCCTGGATCAACATCTTTATTGATCCTCGAACCAATCAACCAATCAGGTTTGAGGGACAAGTTTACAGTTTATGTGAAGATTAGGCTTAGAAGCAAGGTTAGGTGCTTGTACATCAGTGTTATTCCCTCTGATTTTAGGGATAAGTTAAGGGTAGGGTTAGGTTTAGGGGTAGGGATAGGGTTAGGACTACATTTTTGGACATGAATGTTGCTCTAGGTTCAACAAAATATGTGACCAGTGCTGGAAAAATGAGTTGCAATGAGCCTCTTGTTATTTTCACATTCCCTATTTAAAAAACCTTCAAAATGATGTATGATGTGTTGGAATCAGTCAAAAAATGAATGAGCTACACCTCTAAATCGATAAAGTCAGCAAAGTCAATTTTGAGAAAAATCGAGTTAAAGTTTTCAGAAGGTTGCAAAACAAAATCGCCTAGCAACCACACCTTAAAATCCCTGTTAATAACACCAAATTTGGCACAAACCAAGTCAAAACCAATTATCTATAGGAAAAATAGCCTATATATTCAACTTTTTCCCCCATCGTACCACAATTGTTTGATTAACATTAATGAAACAGACAGCATATATATATATATTAAGAGCTACTGTACCGCACGGATCTAATATAATGTTACACATCAGAAGTTTTCCCCCACAGTTAGCCAGACATAACAGATAATGTTTGCGTGAATACTCGCCACAGATATTTTAAAATACTGTGTATATTGGGATCACACGCTGTGCGCGCGCTTCAGATGTGTCAGTCAGCGCGAGGAAGATTGTTTTGTTTACATCTGCATGAGTTTGAAAATCACAATTCATTGGTTCGGACTCACGCCATCGAGAATTCGCTATGAATGTTCACAAAGTTGGAATGCTGCGCTTTAAAACTATACCAAACTTGTGCTGAGGGAAGCGCCAGTCATCGAGAAGCGAGCAGAAAAAAAGAGATGGTCCTCACTGCAGAACACGAGATCCAGGGGCGGGATCCAACTCCTCCCACTTTACATATCCCTAAACCTACCCATCTCCGCCCCCTGGATCTAGAACTAACTCCTCCCATATTACATATCCCTTAACCTACCTGTCTCCACCCACATTACATATCCCTTAACCTACCTGTCTCCACGCCCCCTGGATGTAGATCCAACTATTCCCACTTTACATATCCCTTAACCAACCCGTCTCCGCCCCCTGGATCTTGTGTGTTCTGCAGTGAGGGGCTACTGGAAAAAAATTGCATTTCATGGACAAAGGAAAGGTATCTCCTCTCAGAAAACGACAAATAAAGATACTTTTAGATGTTTAATTGCTATTTGGAGCATTAAGATATCTCTAGACGAGGGCCTAATGAATCATTTTTGTGAAAACCTCAAACTGACATTTTCACTTGTTTTGCCTGTAGCTCATAATTAGCTCGTACATGCGCATACTCATTTTGCCAGCATGGGTCACATATGTTGATCCTGGAACAACATTATTATCCGAAAATCTAATCTTAACCCTACCCATAAGTTATCCCTAAAACCAGAGGAAAATGATAGCCTAGGTAAATAATACTGATGTAGAAGCAACTAACCCTGGTTGTAATCATAAACTGTTGCTCAAATCTGATTGGTTGATTGGAATGTTGTTCCAGGATCAGCAAAGATGTTCATCCAGGAACATGTTGCACTTGATGAAATCAGGTTCTGAGATGTAGATATGTTTAACATTTGAATTTAGGTAGGTGCATATAATGTTTCATATATTGTATATACTTATTTTTAGTAAGTTACTTTTTCATACAGGTCTGTTATTATAATAATATGTCTCATCCAAAAAGCTTAATTTACAGTACAGTTCAAACAAAATAAACCTTAAAAACCTCTACTCACTTCTGGTGAACCCTGTTCAAAAACTAGCTTCTTACATAGCATAACATGGATAAAATAATGTCGTCTGCCTTTATACTTAGAGCTGTAATGCACAACCTGAAAACATATTAAAGGGGCTCTTTCGTGCATCATTTGTACAAGGCAATCGGCTGGTTAAATAAAAATAAAAAGCTATACACAATCAAGGCCCTTTTTGAAACCAGAGGTTTCTTTGTCAAAGGCTGATTTGCAGTGTGATTGCGTTCTCTTACCAAAACTGAAACAGGCTGGCGGTATTCCTAAGGGTCATGAAGGACACGAAAAATGATTTTTTTTCGAGTTAAAAACTCCTGTAATGTCTGATACTGTGATGCAAATAAAATGGGTCATTCTGGAAAAACAGTTGAGCAACAGTTAAAAAGTTTTATGATAAAGAAACATTTTCTCTCACAAACTCTCCATATTATATCTACTCTTCAATTTTCACATTAGTCTCTGATAAATAGGGTGAGAAGACTTGCTTGTGTTAGTAAAGCCTCAATTTAGTTTTGCTGCCAAAACGCATCTCCTGAAAATGCATTAATTTCATGATCGACTTTAAGAGAGCTACAGTTGTTATTGTCTCAATTATACTTGAAAATATGAGCAGTTCATCTTGAGAAATATAGAAAAAGAAGATGGAGATTCTGGCTCACTTCAAATTAATAGGGAAGCCAGAAGTGTCTCAATTTTGAGCAGCTGAATGCCTGAGATGATGATGATGATGAAGAGTGCTTGCTGCTTTACATAAGCATGAGTGCATCTGCATGAACAATGAAGTGTCTATATGCTTTCAGATTTTACAACTGCCTTGATGTCACTGAAGGTAATAATTTTATAAAGCATTAAACATTTTTCTGGTGTTTAACATTTTAAAGTGATTGTCTTAAATATTGATTGGCGTTATTTAAGATATAAGGACATGCAAAAGTATATCAAAACGTTACGAGGATAACTAATAAAAGTGGATTCTACACAACCCGAAACAAAGGATTAAAGCGAGGCGTGACTATTATTGTTATATAATGACATTATTTCCTCAATCTGACAAGAACTTTTGAAGAAAAATAAGTTTGTAATTTTAGTTATATGGAAAGTGTTATGTCTGGATAACATCTCATCACCCATATAAAGCCTATATCTGCTTTAGCACTGCAGTTTTAACCATTCAATAAAAACATTTGCATTATGAACTCAAAAAAGGGCTGTTTAGCAACCGATTGCTGTCTGAATATTCCTCAGATGTGAGAGATGGTAGTGATGCTCTGTAATAGAAACAGACAAGGCAATAATACGAATGGGCCAGTGCTTGTTAAGGCCGAAGACTGATGGTGAAGGATGAAATCTATGAAGAAAATCGGAAATAAGCATGAAATGTCAAATAACACCATCTCCATTCATTTTTTTCTCCTCGTTCAGTTACTTTCCTTTGACATTTTATTAATCTATCTCTCCGCTATGTTACGGTTCTGCCTCTACATGATGCTGCATTTCCCCTTCAGCTTGTCAGCCCTGCTTTGCTTCCCAGAACGCTTGCCGTCGATGTTCAAACTCATGTTCCTCTTCTTCTCCAAGTTGAGGAGCTCCTGGAACAGCTCAGTGACATTGTGGTTGGTCTTAGCCGAGGTCTCCATGAACGCACACTTCCAGGTCTTGGACTGTGCCTCTCCATCCTCGGTCTTGACTTCCCGTTGAGTCTCATCACTCTTGTTCCCCACGAGCATGATGGGGATGTTCTCTATGTTGCCTTTGATGGCGAGAATCTGCTGGTATATGGGCTTTAATTCTTCCAGGGACTGCTTACTGGTGATGGAGTAGACCAGGATGAAGGCGTGACCCTTGGAGATGGACAGACGCTGCATGGCAGGAAACTGGTGGCTGCCAGTTGTGTCTGTGATCTGCAGGGTGCAGACGCTCTTGTCACAGCTGATCACCTGGCGATACGTGTCCTCCACCGTCGGGATGTAGGTGTCCCGGAAAGTGCCTTTGACAAAACGGAGCACCAGTGAGCTCTTCCCCACACCCCCTGCTCCAAACACCACCACACGGTAGTCGTTGCTCTGCTCGGGCATCTTGAGCCTTCACTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38575 False 955 lncRNA 0.41 3 15106736 15156513
TU38574 True 5188 lncRNA 0.43 3 15154062 15160060

Neighbor

gene id symbol gene type direction distance location
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB coding upstream 9563 15091200 ~ 15097173 (+)
CI01000004_15056504_15062261 RABGAP1L2 coding upstream 43556 15055922 ~ 15063180 (+)
CI01000004_15048166_15051524 NA coding upstream 53919 15048166 ~ 15052817 (+)
CI01000004_15010164_15028433 NRD1A, NRDC coding upstream 78028 15010164 ~ 15028708 (+)
CI01000004_14934532_14938094 NA coding upstream 168642 14933874 ~ 14938094 (+)
CI01000004_15200553_15209521 SLC1A8B coding downstream 38182 15198242 ~ 15209824 (+)
CI01000004_15229290_15233374 PEX19 coding downstream 68716 15228776 ~ 15234597 (+)
CI01000004_15237719_15253901 COPA coding downstream 77659 15237719 ~ 15254158 (+)
CI01000004_15260416_15262090 APODA.2 coding downstream 100179 15260239 ~ 15262240 (+)
CI01000004_15277204_15286845 SAMD7 coding downstream 117144 15277204 ~ 15286987 (+)
G34031 NA non-coding upstream 37 15106422 ~ 15106699 (+)
G34028 NA non-coding upstream 2568 15103966 ~ 15104168 (+)
G34027 NA non-coding upstream 3159 15103350 ~ 15103577 (+)
G34017 NA non-coding upstream 12361 15094105 ~ 15094375 (+)
G34009 NA non-coding upstream 61291 15045242 ~ 15045445 (+)
G33896 NA non-coding downstream 63601 15223661 ~ 15223914 (+)
G34055 NA non-coding downstream 76070 15236130 ~ 15236383 (+)
G34061 NA non-coding downstream 111584 15271644 ~ 15271905 (+)
G33857 NA non-coding downstream 259201 15419261 ~ 15425806 (+)
G34090 NA non-coding downstream 273108 15433168 ~ 15433373 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1069836 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 2451025 12646838 ~ 12652570 (+)
G31865 NA other upstream 2911589 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 3439077 11666900 ~ 11667659 (+)
G34220 NA other downstream 779297 15939357 ~ 15939950 (+)
G33815 NA other downstream 903355 16063415 ~ 16066464 (+)
G34400 NA other downstream 1817268 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016640 diras1b coding NC_007113.7 CM002886.2 37059304 ~ 37059966 (-)