Gene
RNA
| Item | Value |
|---|---|
| gene id | G34646 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15223661 ~ 15223942 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39331 | True | 282 | lncRNA | 0.23 | 1 | 15223661 | 15223942 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15186236_15193312 | NA | coding | downstream | 28201 | 15185939 ~ 15195460 (-) |
| CI01000004_15159447_15160043 | DIRAS1A, DIRAS1B, DIRAS1, DIRAS2 | coding | downstream | 63618 | 15159408 ~ 15160043 (-) |
| CI01000004_15086759_15087492 | NA | coding | downstream | 136128 | 15086671 ~ 15087575 (-) |
| CI01000004_15068206_15086386 | MAP1SB | coding | downstream | 137142 | 15067755 ~ 15086519 (-) |
| CI01000004_15063428_15066310 | NA | coding | downstream | 157351 | 15063428 ~ 15066310 (-) |
| CI01000004_15255165_15256033 | APODA.1 | coding | upstream | 31001 | 15254943 ~ 15258227 (-) |
| CI01000004_15300222_15308848 | NADK, NADKB | coding | upstream | 75718 | 15299660 ~ 15308941 (-) |
| CI01000004_15326982_15360355 | SKILA | coding | upstream | 102917 | 15326859 ~ 15360355 (-) |
| CI01000004_15370117_15389832 | PRKCI | coding | upstream | 145812 | 15369754 ~ 15389832 (-) |
| CI01000004_15416876_15425066 | NA | coding | upstream | 192934 | 15416876 ~ 15425164 (-) |
| G34701 | NA | non-coding | downstream | 43412 | 15179974 ~ 15180249 (-) |
| G34575 | NA | non-coding | downstream | 76699 | 15109981 ~ 15146962 (-) |
| G34685 | NA | non-coding | downstream | 108312 | 15113595 ~ 15115349 (-) |
| G34684 | NA | non-coding | downstream | 117959 | 15105465 ~ 15105702 (-) |
| G34674 | NA | non-coding | downstream | 161864 | 15061471 ~ 15061797 (-) |
| G34572 | NA | non-coding | upstream | 22564 | 15246506 ~ 15254180 (-) |
| G34711 | NA | non-coding | upstream | 35502 | 15259444 ~ 15259772 (-) |
| G34713 | NA | non-coding | upstream | 36338 | 15260280 ~ 15262403 (-) |
| G34714 | NA | non-coding | upstream | 46752 | 15270694 ~ 15270899 (-) |
| G34717 | NA | non-coding | upstream | 56001 | 15279943 ~ 15280142 (-) |
| G34668 | NA | other | downstream | 170886 | 15051176 ~ 15052775 (-) |
| G34632 | NA | other | downstream | 198440 | 15011361 ~ 15025221 (-) |
| CI01000004_14827536_14831360 | NA | other | downstream | 395538 | 14827496 ~ 14831526 (-) |
| CI01000004_14808034_14808645 | NA | other | downstream | 415132 | 14807938 ~ 14808969 (-) |
| G34718 | NA | other | upstream | 57074 | 15281016 ~ 15281649 (-) |
| G34633 | NA | other | upstream | 563444 | 15787386 ~ 15787897 (-) |
| CI01000004_15832789_15836192 | NA | other | upstream | 608631 | 15832573 ~ 15836231 (-) |
| G34796 | NA | other | upstream | 636671 | 15860613 ~ 15863748 (-) |
| G34934 | NA | other | upstream | 1177803 | 16401745 ~ 16421506 (-) |
