Gene
RNA
| Item | Value |
|---|---|
| gene id | G33834 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15586066 ~ 15594375 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU38359 | True | 1595 | lncRNA | 0.48 | 10 | 15586066 | 15594375 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15444403_15453408 | SPPL2, SPPL2B | coding | upstream | 131889 | 15444403 ~ 15454177 (+) |
| CI01000004_15400244_15414139 | NA | coding | upstream | 171690 | 15400244 ~ 15414376 (+) |
| CI01000004_15325044_15326740 | NA | coding | upstream | 259279 | 15325044 ~ 15326787 (+) |
| CI01000004_15316323_15317231 | NA | coding | upstream | 268724 | 15315947 ~ 15317342 (+) |
| CI01000004_15291659_15296777 | NA | coding | upstream | 288219 | 15291659 ~ 15297847 (+) |
| CI01000004_15631508_15632389 | NA | coding | downstream | 37055 | 15631430 ~ 15632403 (+) |
| CI01000004_15645965_15650241 | NA | coding | downstream | 51590 | 15645965 ~ 15650274 (+) |
| CI01000004_15687242_15691238 | NA | coding | downstream | 90887 | 15685262 ~ 15691277 (+) |
| CI01000004_15694735_15698103 | SDR39U1 | coding | downstream | 100360 | 15694735 ~ 15698421 (+) |
| CI01000004_15711867_15722470 | PARP2 | coding | downstream | 117492 | 15711867 ~ 15722582 (+) |
| G34142 | NA | non-coding | upstream | 29282 | 15556405 ~ 15556784 (+) |
| G34141 | NA | non-coding | upstream | 29853 | 15555855 ~ 15556213 (+) |
| G34101 | NA | non-coding | upstream | 103751 | 15481920 ~ 15482315 (+) |
| G34100 | NA | non-coding | upstream | 104536 | 15481263 ~ 15481530 (+) |
| G34090 | NA | non-coding | upstream | 152693 | 15433168 ~ 15433373 (+) |
| G33882 | NA | non-coding | downstream | 25704 | 15620079 ~ 15622320 (+) |
| G33803 | NA | non-coding | downstream | 28553 | 15622928 ~ 15710966 (+) |
| G34181 | NA | non-coding | downstream | 154274 | 15748649 ~ 15748926 (+) |
| G34183 | NA | non-coding | downstream | 157288 | 15751663 ~ 15752548 (+) |
| G34186 | NA | non-coding | downstream | 161660 | 15756035 ~ 15756391 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | upstream | 494097 | 15091200 ~ 15097173 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | upstream | 1549166 | 14035393 ~ 14039142 (+) |
| CI01000004_12646972_12652534 | NA | other | upstream | 2930355 | 12646838 ~ 12652570 (+) |
| G31865 | NA | other | upstream | 3390919 | 12192130 ~ 12197418 (+) |
| CI01000004_11666900_11667179 | NA | other | upstream | 3918407 | 11666900 ~ 11667659 (+) |
| G34220 | NA | other | downstream | 344982 | 15939357 ~ 15939950 (+) |
| G33815 | NA | other | downstream | 469040 | 16063415 ~ 16066464 (+) |
| G34400 | NA | other | downstream | 1382953 | 16971995 ~ 17025976 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
