G34613


Basic Information

Item Value
gene id G34613
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15693090 ~ 15694289 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39298
GGCGACCCTCAATGGGGTAGTAGCGTGGTTGTGTAGTTATCGAAATATTGGTTTTGAGTTCCGTTTTAGTTGTATTAATGGTACCTTTGCACTAGTTTTGTTGTTTGTTTGTTTTTTGTATCGAGTTTTTTTTTTTTTTTTTTAAGATATTTAATTTATTTTAGCTATATACGAAATGGAAGCAAATAGTTAACTACATAATCTAGCTGTGTTAGAAACAGGTCAAAATGATGCGTTTTCATAATCATACCGGTGTAATTGACCCATTGCAGCGTATTCGGGACCCGCCTTTATGGAAATGGAACCTCAACTTTTGAAAGAACGTAAGCAGGGAGATGTTCAATAAGGTATTTACTTCAGGTGACCTGGCTTTCTTCTAAGGAGTTGATTTGAGATTCACTTTCTTTTCTCTCCCCCTCATTTATTTTCTCTTTATATTGGCCTGCTAGAGACCATTATCTTCTACAGAAGATTAGAATATAACTGACTTGTAGACTTGTGTCCATTTTGAGTTGTGATGTCCTAGTTTGAAAGTTGACTGCAATATACTGTCAGTGATGTAATGACTTGAAACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39298 True 576 lncRNA 0.35 4 15693090 15694289

Neighbor

gene id symbol gene type direction distance location
CI01000004_15653837_15673610 NFATC4 coding downstream 19480 15653725 ~ 15673610 (-)
CI01000004_15581505_15586825 NA coding downstream 106265 15581390 ~ 15586825 (-)
CI01000004_15561061_15573201 HIAT1A, MFSD14A coding downstream 119889 15559909 ~ 15573201 (-)
CI01000004_15483948_15538159 INSR, INSRA coding downstream 154931 15483948 ~ 15538159 (-)
CI01000004_15456870_15468826 NA coding downstream 224264 15456503 ~ 15468826 (-)
CI01000004_15702447_15708692 METTL17 coding upstream 8082 15702371 ~ 15708692 (-)
CI01000004_15726420_15733105 NA coding upstream 31763 15726052 ~ 15733105 (-)
CI01000004_15751774_15753519 NA coding upstream 57444 15751733 ~ 15755397 (-)
CI01000004_15760841_15761919 HBL4 coding upstream 66501 15760790 ~ 15761987 (-)
CI01000004_15827737_15828938 NA coding upstream 133379 15827668 ~ 15828960 (-)
G34768 NA non-coding downstream 10573 15676572 ~ 15682517 (-)
G34734 NA non-coding downstream 294313 15398571 ~ 15398777 (-)
G34733 NA non-coding downstream 295082 15397806 ~ 15398008 (-)
G34634 NA non-coding downstream 374868 15316241 ~ 15318222 (-)
G34611 NA non-coding downstream 400425 15286323 ~ 15292665 (-)
G34595 NA non-coding upstream 2716 15697005 ~ 15700776 (-)
G34640 NA non-coding upstream 54360 15748649 ~ 15748929 (-)
G34608 NA non-coding upstream 68953 15763242 ~ 15765773 (-)
G34776 NA non-coding upstream 73020 15767309 ~ 15768270 (-)
G34778 NA non-coding upstream 77870 15772159 ~ 15772396 (-)
G34718 NA other downstream 411441 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 602732 15086671 ~ 15087575 (-)
G34668 NA other downstream 640315 15051176 ~ 15052775 (-)
G34632 NA other downstream 667869 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 864967 14827496 ~ 14831526 (-)
G34633 NA other upstream 93097 15787386 ~ 15787897 (-)
CI01000004_15832789_15836192 NA other upstream 138284 15832573 ~ 15836231 (-)
G34796 NA other upstream 166324 15860613 ~ 15863748 (-)
G34934 NA other upstream 707456 16401745 ~ 16421506 (-)
G34982 NA other upstream 808436 16502725 ~ 16515974 (-)

Expression


Co-expression Network