Gene
RNA
| Item | Value |
|---|---|
| gene id | G34640 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 15748649 ~ 15748929 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39325 | True | 281 | lncRNA | 0.27 | 1 | 15748649 | 15748929 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_15726420_15733105 | NA | coding | downstream | 15544 | 15726052 ~ 15733105 (-) |
| CI01000004_15702447_15708692 | METTL17 | coding | downstream | 39957 | 15702371 ~ 15708692 (-) |
| CI01000004_15653837_15673610 | NFATC4 | coding | downstream | 75039 | 15653725 ~ 15673610 (-) |
| CI01000004_15581505_15586825 | NA | coding | downstream | 161824 | 15581390 ~ 15586825 (-) |
| CI01000004_15561061_15573201 | HIAT1A, MFSD14A | coding | downstream | 175448 | 15559909 ~ 15573201 (-) |
| CI01000004_15751774_15753519 | NA | coding | upstream | 2804 | 15751733 ~ 15755397 (-) |
| CI01000004_15760841_15761919 | HBL4 | coding | upstream | 11861 | 15760790 ~ 15761987 (-) |
| CI01000004_15827737_15828938 | NA | coding | upstream | 78739 | 15827668 ~ 15828960 (-) |
| CI01000004_15832789_15836192 | NA | coding | upstream | 83655 | 15832573 ~ 15836231 (-) |
| CI01000004_15836936_15841048 | NA | coding | upstream | 87533 | 15836462 ~ 15841829 (-) |
| G34595 | NA | non-coding | downstream | 47873 | 15697005 ~ 15700776 (-) |
| G34613 | NA | non-coding | downstream | 54360 | 15693090 ~ 15694289 (-) |
| G34768 | NA | non-coding | downstream | 66132 | 15676572 ~ 15682517 (-) |
| G34734 | NA | non-coding | downstream | 349872 | 15398571 ~ 15398777 (-) |
| G34733 | NA | non-coding | downstream | 350641 | 15397806 ~ 15398008 (-) |
| G34608 | NA | non-coding | upstream | 14313 | 15763242 ~ 15765773 (-) |
| G34776 | NA | non-coding | upstream | 18380 | 15767309 ~ 15768270 (-) |
| G34778 | NA | non-coding | upstream | 23230 | 15772159 ~ 15772396 (-) |
| G34620 | NA | non-coding | upstream | 30747 | 15779676 ~ 15780614 (-) |
| G34779 | NA | non-coding | upstream | 47081 | 15796010 ~ 15796390 (-) |
| G34718 | NA | other | downstream | 467000 | 15281016 ~ 15281649 (-) |
| CI01000004_15086759_15087492 | NA | other | downstream | 658291 | 15086671 ~ 15087575 (-) |
| G34668 | NA | other | downstream | 695874 | 15051176 ~ 15052775 (-) |
| G34632 | NA | other | downstream | 723428 | 15011361 ~ 15025221 (-) |
| CI01000004_14827536_14831360 | NA | other | downstream | 920526 | 14827496 ~ 14831526 (-) |
| G34633 | NA | other | upstream | 38457 | 15787386 ~ 15787897 (-) |
| G34796 | NA | other | upstream | 111684 | 15860613 ~ 15863748 (-) |
| G34934 | NA | other | upstream | 652816 | 16401745 ~ 16421506 (-) |
| G34982 | NA | other | upstream | 753796 | 16502725 ~ 16515974 (-) |
