G34608


Basic Information

Item Value
gene id G34608
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15763242 ~ 15765773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39293
CAGGGGTCAGCATCGGCACCCTGACTGGTCTGCGGCTATGCAGCTCCATACGCAACAAACTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTGGAGCAATCTGAGCTACAGTAGCTCGTCTGTTGGATCAAACCACACGGGCCAGCCTTCGCTCCCCACGTGCATCAATGAGTCTTGGCCGCCCATGACCCTGTCGCCGGTTCACCACTGTTCCTTCCTTGGAGCACTTTTGATAGATATCAGTGGTTTAAGTAGTAGGAAGCCATTTATTAGAATCACAGATAGAGAAACCGAGGGAAAGTTTGTGGACACTGAGGGGAAGCAATTGACTTTTACCAACTGGATTAATGGTCAGCCTGATGATTTTAAGGGACTACAAGACTGTGGTATTATCCCACACTCTGGCCTTTGGGATGATGTCAATTGTGATAGTCCACATCCTATCATATGTGAAATAGAGATTTAAATAGAAAAAGAAATAGAATTTACACTGTAAAAACAAACCTATAGAACCTACTCAAAAAATTGAGGTAACAAGTAAAAAGTCTACCTGACATAATATATTACAACTTATAAAAAATGAGTAATATGAACTTGATTATAATAGCTTCTGTAGCTTGCATAGCAAACATTTGCAATGAATAAGTTGTCACCAGAGGCATCAGGCCCCCTCAGATTTCCATTACCATATATACATATATATATATATATGTGTGTGTGTGTGTGTGTGTAACCCCTCTACCCAGGTCCTACTCGCCCCGCGATGCGCGGGCCTCGAACCTAGGTCTCTGGCATGTGAGTCGGACACTCTAACAAGGAGGCTAAAGGCCAAAACTTGTAGTGTCAGTTTACTCACACAGCAACTACTAGCTGGCCTTCATTACACGCACATATAAATACAAATATATATATATATATATATAATTAACCCATTGAAGCGTATGATCACATCGGTGTGATTAGAAACGTTCAGTGCGTCACATGATCAACTGCTACATTCAACTGTTTAGTGTTTTCAACCTTATGTTTATTTTATGTTTCTGACATTTAAATACAGATAAGTACTAGCATTATAGTTTGTAAAATATACACTAATGTTTATGGAAGAGGCAATAACAACTATTTCAAAAATAATTTGACAGCCCCGCCCCTTTTCAGCACAGCGCTCGTTGTCTTTTGTCTTCCGGTTTGTATTTCCACAGTGATCTTACGTATTTATAAATGAACTGGTCTACTGACATTTGTAAAGACATCTGCTTTAAACATTACAATGCTCATGATAACTTTCTTTAACTCTACAAGTAAATCCACTTCACCAGCTAATTATTCTTTGACAGCGATGCGATAGAAATGTACAGAGCTACCACAAAGACGGAAGATCAAAGACAATATTATAAAGATGGCGGCGCGCTTGTTTCTCTGTGTAACGAGGCGGGACTCAGGGTAAGATCCATTAGCAAGCTTTTATTAAACAGTTCTTAGTCAAACAGGCAATGGTGGAATAACAGCAAATTGGTATGGCAGAGAGCAGGCAGAATCGTAGTCGAGGAACAGGCAAAGGGTCAGGGCTGGCAGATAACAATCGTAAATCCAAAACAGAGCAAGTAGTCCAAAGGGCAGGCAGCAGAGAATCGTACACAGGGAACAGACAGGAACAGGAACAGGAACAGGAACAGGAACGCGGGCGGGCAGACAGACAGACAAGATAACAAGTAAACAAGACCTCGCAAAGTGTGTGTGTGGATGTGAGTGGCTTAAATAGTCCGGGTAATGAGCTGCAGCTGGGTGTGGTGATTATTGATTGGTGGAGTGAGTGCAATGTGATAGGCAGGGAGGATTGTGGGAAATGAAGTCCGGGAATGACTGGAACTGTGACACTCTGGCTCATAAGAGTTGCGTCCCAAATGACGCACTATACACTATGCACTTATACACTATGTACTTATGCATGTAGTGTATGAATTTTATAAATTTATTTTGTCATTAAACATCGAAGTCTGATCCCCCCTCCACTTCCGCTACGTAATTAAAGCTGCGACAGCTGAGTGCATGAAGTGTCCAACATTCCACACTTCATTTTTTCCATTAATTAAGTGCATCATCCGTGCACTTTTTCTTTCTGGAATTTTCTGTGAACGCACTACTCACACTATTTGTACTTAAAAATGTCATAGAATAGTGCATAAGTATGCGAATTGGGACGCACCTAATGTCTATATGTAACTATAAAGTTTACTCTAATCTTAGAATATTGTTGGTGCAAAATTAATATTGCCCCAGTATTGTCGTCTTCTTGGTGAATTTCTTAGTTTTGAAGCTCACAGCCTGGGCGATTTGTGAGGTCAGAAACCATCGAATTTTACATATTTAAGTAGATTGAGCACAATTAATTTCGAAACAAAATTGTGTTACTTTGTGTAACATTTTTTAATTAAGTAAACTGAACAAGCAGCAAAAATCATTTTTACAATATTATGAAATATACAAATCTGTGATACTAATATGCTATTAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39293 True 2532 lncRNA 0.29 1 15763242 15765773

Neighbor

gene id symbol gene type direction distance location
CI01000004_15760841_15761919 HBL4 coding downstream 1255 15760790 ~ 15761987 (-)
CI01000004_15751774_15753519 NA coding downstream 7845 15751733 ~ 15755397 (-)
CI01000004_15726420_15733105 NA coding downstream 30137 15726052 ~ 15733105 (-)
CI01000004_15702447_15708692 METTL17 coding downstream 54550 15702371 ~ 15708692 (-)
CI01000004_15653837_15673610 NFATC4 coding downstream 89632 15653725 ~ 15673610 (-)
CI01000004_15827737_15828938 NA coding upstream 61895 15827668 ~ 15828960 (-)
CI01000004_15832789_15836192 NA coding upstream 66811 15832573 ~ 15836231 (-)
CI01000004_15836936_15841048 NA coding upstream 70689 15836462 ~ 15841829 (-)
CI01000004_15881212_15881809 NA coding upstream 115090 15880140 ~ 15883692 (-)
CI01000004_15911104_15915972 NA coding upstream 145163 15910936 ~ 15916019 (-)
G34640 NA non-coding downstream 14313 15748649 ~ 15748929 (-)
G34595 NA non-coding downstream 62466 15697005 ~ 15700776 (-)
G34613 NA non-coding downstream 68953 15693090 ~ 15694289 (-)
G34768 NA non-coding downstream 80725 15676572 ~ 15682517 (-)
G34734 NA non-coding downstream 364465 15398571 ~ 15398777 (-)
G34776 NA non-coding upstream 1536 15767309 ~ 15768270 (-)
G34778 NA non-coding upstream 6386 15772159 ~ 15772396 (-)
G34620 NA non-coding upstream 13903 15779676 ~ 15780614 (-)
G34779 NA non-coding upstream 30237 15796010 ~ 15796390 (-)
G34641 NA non-coding upstream 35230 15801003 ~ 15809605 (-)
G34718 NA other downstream 481593 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 672884 15086671 ~ 15087575 (-)
G34668 NA other downstream 710467 15051176 ~ 15052775 (-)
G34632 NA other downstream 738021 15011361 ~ 15025221 (-)
CI01000004_14827536_14831360 NA other downstream 935119 14827496 ~ 14831526 (-)
G34633 NA other upstream 21613 15787386 ~ 15787897 (-)
G34796 NA other upstream 94840 15860613 ~ 15863748 (-)
G34934 NA other upstream 635972 16401745 ~ 16421506 (-)
G34982 NA other upstream 736952 16502725 ~ 16515974 (-)

Expression


Co-expression Network