G34196


Basic Information

Item Value
gene id G34196
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15779675 ~ 15780624 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU38759
ATCCAACTCTGAAATGGCAGTTTATTATTGAGTCAACAAGAATTTACAAACAATGCGAAATCTACATTAATTACAATGGTTGATTAACGTTACAATCTTCTACAGGTGTTATGCCGAGTTCTGCATAATGTTATATGCCAAGAATTGCATGCACCTCCAAGTACTGTTTAAAAACGATATAATATTCTTTGTGGGGTTTATTAATGGTGATAAATAATTCAGCAGAACAGATGTTGTAGGCTACCTGCAGAGATTTGCATCCACCTCTTTTCTCAGCATAAATGACTGTTACCTCCCGTGAGGTGCATGCAGAACTCACCATAACGGGACGTTCTAAAACGTTTAACGTGAAAAAGCCTAACGTGGCTTAATTTACTAAGACAGTGTTATTAACAAGCCAAACTTAGTAAACACCATACTAATAAAGCATACTACGTACAGAAAAGCAGATGAGCCCATAATATGAACGCAACACGTTTAATTAAGCATTTTGCTCCCATAAAGAAAACGCTTAACGTGGCTTAATGTACTGAGACAGTGACATTAAAAGACCAAACTTAGTAAACACTATACTAATAAAGCATACTATAGCCTATAGAATATTTGGTTTGTGCAGAATTTGATCTTTTAATATCACATAGTAGGCCCCAACTGCTTTTCTGTACATAGTATGGTTTATTAGTATGATGTCTACTGAGTTTGGTCTGTTAATATCACTGTCTTAGTACATTAAGTCACGTTAAGCGTTTTTTCCGGCATAACTCGTTAGCGGTCTGCCCCCTGAATGCTCCCAGTATCCCCTTACTGCAGATCACTCGAGATCCAGGGGGTGGAGACGGGTAGGTTAAGGGATATGTAAAGTGGGAGGAGTTGGATCCAGATCCAGGGGGCGGAGACGGGTAGGTTAAGTCATATGTAAAGTGGGAGGAGTTGGATCCAGATCCANNNNN
>TU38760
ATCCAACTCTGAAATGGCAGTTTATTATTGAGTCAACAAGAATTTACAAACAATGCGAAATCTACATTAATTACAATGGTTGATTAACGTTACAATCTTCTACAGGTGTTATGCCGAGTTCTGCATAATGTTATATGCCAAGAATTGCATGCACCTCCAAGTACTGTTTAAAAACGATATAATATTCTTTGTGGGGTTTATTAATGGTGATAAATAATTCAGCAGAACAGATGTTGTAGGCTACCTGCAGAGATTTGCATCCACCTCTTTTCTCAGCATAAATGACTGTTACCTCCCGTGAGGTGCATGCAGAACTCACCATAACGGGACGTTCTAAAACGTTTAACGTGAAAAAGCCTAACGTGGCTTAATTTACTAAGACAGTGTTATTAACAAGCCAAACTTAGTAAACACCATACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38759 False 950 lncRNA 0.32 1 15779675 15780624
TU38760 True 421 lncRNA 0.36 1 15779675 15780095

Neighbor

gene id symbol gene type direction distance location
CI01000004_15711867_15722470 PARP2 coding upstream 57093 15711867 ~ 15722582 (+)
CI01000004_15694735_15698103 SDR39U1 coding upstream 81254 15694735 ~ 15698421 (+)
CI01000004_15687242_15691238 NA coding upstream 88398 15685262 ~ 15691277 (+)
CI01000004_15645965_15650241 NA coding upstream 129401 15645965 ~ 15650274 (+)
CI01000004_15631508_15632389 NA coding upstream 147272 15631430 ~ 15632403 (+)
CI01000004_15787382_15803133 NA coding downstream 6758 15787382 ~ 15803144 (+)
CI01000004_15825817_15827475 TEP1 coding downstream 45193 15825817 ~ 15827603 (+)
CI01000004_15859240_15861471 APOL1 coding downstream 78616 15859240 ~ 15863449 (+)
CI01000004_15867404_15875293 NA coding downstream 86361 15866985 ~ 15875304 (+)
CI01000004_15892502_15900203 DCAF8 coding downstream 109749 15890373 ~ 15900852 (+)
G34195 NA non-coding upstream 177 15779166 ~ 15779498 (+)
G34194 NA non-coding upstream 2324 15777033 ~ 15777351 (+)
G34193 NA non-coding upstream 2667 15776790 ~ 15777008 (+)
G34192 NA non-coding upstream 3162 15776259 ~ 15776513 (+)
G34188 NA non-coding upstream 11684 15767752 ~ 15767991 (+)
G34205 NA non-coding downstream 62508 15843132 ~ 15843402 (+)
G34213 NA non-coding downstream 106654 15887278 ~ 15887534 (+)
G34214 NA non-coding downstream 140059 15920683 ~ 15920886 (+)
G34215 NA non-coding downstream 143080 15923704 ~ 15924496 (+)
G34216 NA non-coding downstream 147877 15928501 ~ 15928750 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 687706 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1742775 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3123964 12646838 ~ 12652570 (+)
G31865 NA other upstream 3584528 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4112016 11666900 ~ 11667659 (+)
G34220 NA other downstream 158733 15939357 ~ 15939950 (+)
G33815 NA other downstream 282791 16063415 ~ 16066464 (+)
G34400 NA other downstream 1196704 16971995 ~ 17025976 (+)

Expression


Co-expression Network