G34583


Basic Information

Item Value
gene id G34583
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15930375 ~ 15944664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39265
TTGTGATTTACTGCACTTTTTAGACACAGAAGGAAGGCTGGACAATCCCTTCTCCGGCTAATGTCACATAAGGTCACATCCTGTCTTAACAAAGAAAGAAGGTATGACTAATGACCTTGAGGAAAAGCCTGCTTAGCACCTTTAGGTCCTATCACAGTGGGACAAACAATCCATCCACATATTAGTACAAATAAACATTGAGACAATAACAACAAATTCAACAGATGGATGTACACTTAAAATAATGTTGCTGCTCCCTCTGACGATCTTACAAATTTTTGGTTACATTTTTTATGCTTGAAAGTCAGGTCCTTTCCCAAATGTATAATTTACCGGCCAATTACAGTATTGTCCTTACGATTGAAAGAAATGGATGGCAATGAACTGAAAGCAATATTGCTAATTGTTTTGGTTTTATAAGTGATGTCAACATTTGGAAGTGAATATCTGAAGGTCTAAGAGAGAGCATGGTCTTTGAATTAATCATTGGGTCAATGGGAGATAGAATGATGAGTGCATTCCTAGATATGGTGGAACAAGGTGACAGTTAAATGATGACATTTTTAACCTCGTGATTTCCGACAAAAAATATTAAAGGAATTTTTATAACGTTGATGATTCAGACAGTCGCAATTAGACAGACTTTAGTTTGGACAATACATAGCATGTAAGATGGTAAAAGTTTAATCATCGTCTTCATCGTCGTCGTCGTCATCATCGTCGTCGTCGTCATCGTCGTCGTCATCGTCGTCGTCGTCATCATCGTCGTCATCATCGTCGTCGTCATCGTCGTCGTCATCATCGTCGTCGTCGTCGTCATCATCGTCGTCATCGTCGTCATCATCGTCGTCATCATCGTCGTCATCATCATCGTCATCATCATCATCGTCGTCGTCATCGTCGTCATCATCATCATCGTCATCATCATCGTCATCATCATCAGGATCGATTTTGTTCGATAGCACATCCTCCAGCCAATCCTCCAGCTCATCAACTGTTGGCATGTCGTCATCATCATCCATATCAAACCAGATACTTTCAGCATCATCAACCTCCACTACACCAATCTGAGGTGAGGACAGGTCAATGTCGAAGGTCTTCTCCCAATAGGGGACAAGCAGAGGGAAGTCATCGGGGTCGATCCAGACGATGCTCAGGTCGGGATTGTCGGTGTTATCCTCTGCCACTTCCTTCACGATTTCAAGGAATTCAAAGCCGTCTGGGTCGCCCTCCTCAGCAAAAGCAATTATATGCTCACCATCAAGAGCATCCGCCCAGATCTCATACATGTTGTGTGGCTGCATTTTCCTCAGTGTTGGCCTGTCATTGTCCTCAATGAATTCAACAAGTTCTTTCTCGCTGTAGGGTTTACCAGGGATGACGACGGGTTCATCCATGAAGGGCTCATAGAAGTCCACCTCATTCAACTTCAAGCCTAGTTTTGTAGCAACCTTTGGACTAAAGGTGGCAAAGAACTTGATGTGTGGATGAAACTCCTCTGCTGCGTCCTCATATTCATGGTAGTGGTCAGATTTCTCACTCTTGAAGAAGCCTATCAGCTTGATATCCTCCTCAATATTATGGAAACCTTTCAACTCACGCACATTGCTAATGATCTCAACTGGATCCTCAATGACATCATAGAGGAACTCCACCAGTGTGTCCGCAGCAAGCTCTCCATCGTACTCAATGACCTCATCCTCAAAGAAGATATAGATACTGTCAGCCTCATCAAGACCTAGTTTCTTGGCAACAGCTCTGTCTGTCTTCTCATCGAGTAGGCCAATCCCGATGTCCTCGTCGTCAAGATCCTCCAGGACTTGTGCAGCAAGCTCAAGGGCCAGCTCCTCAATCTGAAACTGTTTCTGGGCGACTCTGCTGGATCCTACGTGCTCATGGTAGTACACCACCATCACGTCATATTTCTTCATCACAGACTTGTAATTCTTGGCATTAAGCTCGTGAACGCGGTCCTTTCCATCGTACTCAGGGATGTCCATACCTTTCTGGCCCCATGACAGCTGCCCGAAGGTCAGAAGGAGCCCAAGGAACACTAGGTTCCACTTCATGATTCAATATACTTAAGTAGGGAAAACTGTAGTTCCAATGAATTTAAAACAAATCGACTAAATACTTCATAAAATTAAATTAGAAAGGACCTGTGATCCCCGC
>TU39266
TTGTGATTTACTGCACTTTTTAGACACAGAAGGAAGGCTGGACAATCCCTTCTCCGGCTAATGTCACATAAGGTCACATCCTGTCTTAACAAAGAAAGAAGGTATGACTAATGACCTTGAGGAAAAGCCTGCTTAGCACCTTTAGGTCCTATCACAGTGGGACAAACAATCCATCCACATATTAGTACAAATAAACATTGAGACAATAACAACAAATTCAACAGATGGATGTACACTTAAAATAATGTTGCTGCTCCCTCTGACGATCTTACAAATTTTTGGTTACATTTTTTATGCTTGAAAGTCAGGTCCTTTCCCAAATGTATAATTTACCGGCCAATTACAGTATTGTCCTTACGATTGAAAGAAATGGATGGCAATGAACTGAAAGCAATATTGCTAATTGTTTTGGTTTTATAAGTGATGTCAACATTTGGAAGTGAATATCTGAAGGTCTAAGAGAGAGCATGGTCTTTGAATTAATCATTGGGTCAATGGGAGATAGAATGATGAGTGCATTCCTAGATATGGTGGAACAAGGTGACAGTTAAATGATGACATTTTTAACCTCGTGATTTCCGACAAAAAATATTAAAGGAATTTTTATAACGTTGATGATTCAGACAGTCGCAATTAGACAGACTTTAGTTTGGACAATACATAGCATGTAAGATGGTAAAAGTTTAATCATCGTCTTCATCGTCGTCGTCGTCATCATCGTCGTCGTCGTCATCGTCGTCGTCATCGTCGTCGTCGTCATCATCGTCGTCATCATCGTCGTCGTCATCGTCGTCGTCATCATCGTCATCATCATCGTCGTCATCATCGTCGTCGTCATCATCGTCGTCGTCGTCGTCGTCATCATCGTCGTCATCGTCGTCATCATCGTCGTCATCATCGTCGTCATCATCATCGTCATCATCATCATCGTCGTCGTCATCGTCGTCATCATCATCATCGTCATCATCATCGTCATCATCATCAGGATCGATTTTGTTCGATAGCACATCCTCCAGCCAATCCTCCAGCTCATCAACTGTTGGCATGTCGTCATCATCATCCATATCAAACCAGATACTTTCAGCATCATCAACCTCCACTACACCAATCTGAGGTGAGGACAGGTCAATGTCGAAGGTCTTCTCCCAATAGGGGACAAGCAGAGGGAAGTCATCGGGGTCGATCCAGACGATGCTCAGGTCGGGATTGTCGGTGTTATCCTCTGCCACTTCCTTCACGATTTCAAGGAATTCAAAGCCGTCTGGGTCGCCCTCCTCAGCAAAAGCAATTATATGCTCACCATCAAGAGCATCCGCCCAGATCTCATACATGTTGTGTGGCTGCATTTTCCTCAGTGTTGGCCTGTCATTGTCCTCAATGAATTCAACAAGTTCTTTCTCGCTGTAGGGTTTACCAGGGATGACGACGGGTTCATCCATGAAGGGCTCATAGAAGTCCACCTCATTCAACTTCAAGCCTAGTTTTGTAGCAACCTTTGGACTAAAGGTGGCAAAGAACTTGATGTGTGGATGAAACTCCTCTGCTGCGTCCTCATATTCATGGTAGTGGTCAGATTTCTCACTCTTGAAGAAGCCTATCAGCTTGATATCCTCCTCAATATTATGGAAACCTTTCAACTCACGCACATTGCTAATGATCTCAACTGGATCCTCAATGACATCATAGAGGAACTCCACCAGTGTGTCCGCAGCAAGCTCTCCATCGTACTCAATGACCTCATCCTCAAAGAAGATATAGATACTGTCAGCCTCATCAAGACCTAGTTTCTTGGCAACAGCTCTGTCTGTCTTCTCATCGAGTAGGCCAATCCCGATGTCCTCGTCGTCAAGATCCTCCAGGACTTGTGCAGCAAGCTCAAGGGCCAGCTCCTCAATCTGAAACTGTTTCTGGGCGACTCTGCTGGATCCTACGTGCTCATGGTAGTACACCACCATCACGTCATATTTCTTCATCACAGACTTGTAATTCTTGGCATTAAGCTCGTGAACGCGGTCCTTTCCATCGTACTCAGGGATGTCCATACCTTTCTGGCCCCATGACAGCTGCCCGAAGGTCAGAAGGAGCCCAAGGAACACTAGGTTCCACTTCATGATTCAATATACTTAAGTAGGGAAAACTGTAGTTCCAATGAATTTAAAACAAATCGACTAAATACTTCATAAAATTAAATTAGAAAGGACCTGTGATCCCCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39265 False 2172 lncRNA 0.38 12 15930375 15944664
TU39266 True 2214 lncRNA 0.33 11 15930375 15944664

Neighbor

gene id symbol gene type direction distance location
CI01000004_15922924_15923872 NA coding downstream 6503 15922726 ~ 15923872 (-)
CI01000004_15911104_15915972 NA coding downstream 14356 15910936 ~ 15916019 (-)
CI01000004_15881212_15881809 NA coding downstream 46683 15880140 ~ 15883692 (-)
CI01000004_15836936_15841048 NA coding downstream 89327 15836462 ~ 15841829 (-)
CI01000004_15832789_15836192 NA coding downstream 94171 15832573 ~ 15836231 (-)
CI01000004_15956601_15962195 TOX4 coding upstream 11336 15956000 ~ 15962930 (-)
CI01000004_15965178_15990162 CHD8 coding upstream 20456 15965120 ~ 15990175 (-)
CI01000004_15991836_15995032 CBLN12, CBLN3, CBLN1 coding upstream 46976 15991640 ~ 15995184 (-)
CI01000004_15999644_16005705 NA coding upstream 54831 15999495 ~ 16006425 (-)
CI01000004_16079875_16086958 ACIN1, ACIN1A coding upstream 135211 16079875 ~ 16087211 (-)
G34814 NA non-coding downstream 1625 15928443 ~ 15928750 (-)
G34811 NA non-coding downstream 4114 15926010 ~ 15926261 (-)
G34616 NA non-coding downstream 19704 15906913 ~ 15910671 (-)
G34801 NA non-coding downstream 42962 15887137 ~ 15887413 (-)
G34830 NA non-coding upstream 54155 15998819 ~ 15999147 (-)
G34836 NA non-coding upstream 74894 16019558 ~ 16023123 (-)
G34837 NA non-coding upstream 78580 16023244 ~ 16024781 (-)
G34639 NA non-coding upstream 178896 16123560 ~ 16136696 (-)
CI01000004_16146406_16149756 NA non-coding upstream 201746 16146076 ~ 16149756 (-)
G34796 NA other downstream 66627 15860613 ~ 15863748 (-)
G34633 NA other downstream 142478 15787386 ~ 15787897 (-)
G34718 NA other downstream 648726 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 840017 15086671 ~ 15087575 (-)
G34934 NA other upstream 457081 16401745 ~ 16421506 (-)
G34982 NA other upstream 558061 16502725 ~ 16515974 (-)
G34995 NA other upstream 584778 16529442 ~ 16533008 (-)
G34999 NA other upstream 592531 16537195 ~ 16541278 (-)
CI01000004_16596848_16599652 NA other upstream 634003 16596476 ~ 16601205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015744 casq1a coding NC_007113.7 CM002886.2 38039857 ~ 38054482 (+)