G34836


Basic Information

Item Value
gene id G34836
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16019558 ~ 16023123 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39544
CCACTTACCTTGAGTCCACTGCGACTTGCATACTCTTTTCCACATTCAGAACAGTGGTAGATTTTTTTCTCTGGCATGGGAGGTGGAAGACTGGGAGTCATTGATATGCATACAGTTGAGTCTGTTTTGTCCATTTCAGTTCCTGTTGTATCTTTAAGGTCCACTTTATCCTTTGCGGTTGAACTAGAGTGAGTTTCCTTTATGATCTTCTGCACATGTATGTCAGGCTCCTCAGTCTCAGCTGCATCCTCATTTGTCTTGTCTGCAGTGTCTGACACCATATCTGCATTAATACTCAAATCTGGAGTTGCCCTTTGACCATTCTTTGGTGTTTTATGTATTTTATCATCTGTCTTTTCTTCCTCTTGGGGGATTGATTTGGATGTTTGGACAAGGCTTTGGTCAGGCTCCTCTAGGCGTACCGTATGAGAAGACACACTCTCAGATCTCAGCGCAAGAAGAGAAGGTGGTGTTGATGCTGAATGTGGCCTAGGAATCCTGGATGCATTTTGAGCTTGTATACCAAGAAGATCCTCCAGATTTGATCTGGATCCAGAGCAAGAAATAGGTGAGAGAGATATATTTTCACTGAGTTCACAGTCATCTCTTTGTGGACTGGCTTTCATTAGAGCAGACATCTTTTTATCTTCCAAGGAGGCAGTGTTGCTGGAAAGTTCAAAAGATAGTTCATTAGTTGCAGAAGGACCAGTTGTTGCTGATGCTGACTGGGTGGCAGGAGGGACAAGTGATGCTGCAGATTCTACTGGAGAAGATACACACTGAGAGAGCTCAGGGGGATCAGGTCTGAATGTTGGAGGTGAATGGGGAGTTGGATTCAAGGAGGGGTCAGGGCTTAGGTTGAAAGGTGGTATACGACCTGAGCTAAATGAAGCAGGTAGGCTGGAGGTTACAGGACATACTGTGGGAGCAGTGCTCACAGCAAGGGATTCGGTATATCTAGAATCTGAAACTGACTGTAGATCATCATGTAGTAACTGAACATCCATGCTAGGGCTTATCTCTGAAGCAGAGAGCTCAATAGATTGGGAATGGGACAAAGTATCACATTCTGTTGAAGTATCAGGCATGTCCTCTGGTGGTAGCTGTCCTCCTAAATGCATGCGGATATGATGTTGCAGGACAAGGGCATTGGTAAACTTCCGTTGGCATAAGGGGCAGGAATTCTGGGCACGACTGTTTGGTGGGCGGGCTCGATGGGTGGCAAGGTGTGCTCGAAGGCTTCCTTTTGTTGAGAAGGAACGACCACATAGCTTGCAGGGGAAGGGTCGCTCACCTAAATGAGTAGCCTGGTGCAGACGCAATGCTCTTGGGCAGCTTAACACCCGCAGGCACACGCTACACTGATTTGGGGCAAGTGTCCCAGCAGAGTTCATAAGTCCCAGGTAAGGTGACTCCTTGCTGAAGAGGGATGATGGTATTTGGATTGTAGATGATGGAAGTGAGGTGACCACATTTGTACTGAATGTACTTGTGCTCATTAAACCACTGGTGCTATAGCTTAATGCACTTGCTACACTGTGGCTGCTGGTAGAAGTCTCCCCAATGGATGAAACCCAGTGTGATTGACTATGTGGTTCTTTCTCTAACTTTTCCACCAGTCTCTGCAGCTTTGATGTGTCCGAGGTTGGGGTGGAGATGGAAGGGGCAGTGGATGAAGCTGTGAATGGGAACGGGATATGTTGTTGCGGGGATGGCAGGAATGACCCGGCTGGAGTTGTCTGCCTGAGAAACCCATGGCCTGGAAGATGGTGAGTGGAAGATGCTGGGAAGAAGATTTTGGGTAAGTTGGCAAGCTGTGAGTAAGCAGAATGGGGGAGCAGAGTAGGTATGGGTGGGGTGTTCTCATCAAAGCACTGTTGTTTCACTCCTTTATATACCCCAGCAATGGAGGAGGTGGATGAGGCAGGAGATGAAAGAAGGGTGGAGGCCAGAGAGGAGGATGATGATGAAGATGTTATTGAGGAGGTAGTGGATGTGGAGGCTGCAGCAGCCGCAGCCGCAGCAGCACGGTTGAGTTGAAGGAGAGAGTGTGCAGTGGTCAGCAGAGCCAAATCAATACTAGGAGGCAGAGATGAGGTTGTGGCACGTGTTGAGGCAGTAGTGCCCTCAAGACTGTCACCACACAGATCATCCTCTTGTTGTTTCTGATGCTTCTGAATAGCATTTGTATTGGTGGAGGTGATCGTTTGTTTTTGTGCTGATCCTCCCATTGATCCCCCAGTTACAGACGCAAAAAGTGAGCAGGGAAACAACGAAAAAGAGAGTTCAGGGTTTTGCTCACGATGACGCAAGAAGTGGACCTTGAGGTTCCCTCGTGTGGTGAATCGACTGAAACATACAGGGCACTGGTAAGGACGCTCCCCTGTGTGTGAACGCAAGTGTATTTGCAGGGATGAATCGCTGCTGAAGAGTTTCCGGCAAAATCGGCATGCATGCTGCATGCGCCCAGATGATAAGACAGGCGTACCTCCTTGACCAGAGAGTTTTGTATCCTGTGAGGGGGCAGAAGGGACAGCAGCTGCTGGGAGAGACTGGTTTGGGAAGGTAAGACTACTGTTTCCACTGGCTCCTGTGGTGTTAGAGGATTTTTGCGACGATAGGCCAAGGGAAAGTGTGAGTGGATAGTTTGAGGCAGCAGGTGAGGATACTGATGAGGATGTGGCAGCACTTGTATGATTGGTGAAGTTTGCTGGAGAAACTACCCCACTGTCATATTGTGCCTTATGGGGGCGCAAGACATTCAAGAGAGGGTGGGCATGTTTAGAGGACTTAGAGGTGGTCTGAGGGGGTAGCAGGGATGAGAAACAGGCCAAAAGAGGGGCCACAGAGGTAGGGGGAGGTGATGACTTTGGTCGTGAGGGTCTGGGGTTGTTATCAGAACTTTTTAAACAGAGCTGTGGCAGCGATGGTAGTATGAAAGGCTTTGAATCCACTTCACAAGATCCTCCTCCCAGTCTCAATACTTGCCGACAGATTTCCTCAGTCATCTGCATTTGATGGATTTGCCTCTGCTGCAGCACACGTAGCTCCTCCAAGATGAAAGCAATACTGACGGGTGCACATGCTGGGGCTGAAGGGACTGTGCTTGGGCTGGAAGAGGGTGTAACTGGACTTGGGGGACCCTGAGGCATAGAACTGGGGCTTCCAGGATATGGAGGCACACAGAGAGAAGCAGCAGTGGAGGAGGATGAAGAAGAGGTTGTGGTTGCTGACACACCTAACTTTGGAGAAGCCATGGGTGAGTGAGTGTGGTTGTGGGTAGAGAGCACAGTTGGTGCAGTGGTAGTGATAGTCTGATTAGTAGAATGGGATGGGATGTCAGGGATATGGGAAAGTTGAGACTCTGTTAGGTTTAAGGGAAATTGTATGGGCTGGCAGGGGATGTGAAAGATAGGATGGTTTGGTCTGGTCAGAGAAGGTGTTGTGAGCCTCTCAATTGGTGGACTTGGGATTAAGGTTGATTGACAGCTTTGAGTTGTAGAGTATGTGGAAGAGCAGGAAGAGTTCTTTGCAAGAGTAGAGGTGAGGGACTTCACTGCCAACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39544 True 3566 lncRNA 0.49 1 16019558 16023123

Neighbor

gene id symbol gene type direction distance location
CI01000004_15999644_16005705 NA coding downstream 13133 15999495 ~ 16006425 (-)
CI01000004_15991836_15995032 CBLN12, CBLN3, CBLN1 coding downstream 24374 15991640 ~ 15995184 (-)
CI01000004_15965178_15990162 CHD8 coding downstream 29383 15965120 ~ 15990175 (-)
CI01000004_15956601_15962195 TOX4 coding downstream 56628 15956000 ~ 15962930 (-)
CI01000004_15922924_15923872 NA coding downstream 95686 15922726 ~ 15923872 (-)
CI01000004_16079875_16086958 ACIN1, ACIN1A coding upstream 56752 16079875 ~ 16087211 (-)
CI01000004_16092821_16115520 NA coding upstream 69583 16092706 ~ 16115530 (-)
CI01000004_16146406_16149756 NA coding upstream 122953 16146076 ~ 16149756 (-)
CI01000004_16152238_16154327 NA coding upstream 128610 16151733 ~ 16154327 (-)
CI01000004_16155534_16158067 NA coding upstream 132249 16155372 ~ 16158067 (-)
G34830 NA non-coding downstream 20411 15998819 ~ 15999147 (-)
G34583 NA non-coding downstream 74894 15930375 ~ 15944664 (-)
G34814 NA non-coding downstream 90808 15928443 ~ 15928750 (-)
G34811 NA non-coding downstream 93297 15926010 ~ 15926261 (-)
G34616 NA non-coding downstream 108887 15906913 ~ 15910671 (-)
G34837 NA non-coding upstream 121 16023244 ~ 16024781 (-)
G34639 NA non-coding upstream 100437 16123560 ~ 16136696 (-)
G34866 NA non-coding upstream 210188 16233311 ~ 16233711 (-)
G34867 NA non-coding upstream 210709 16233832 ~ 16234289 (-)
G34796 NA other downstream 155810 15860613 ~ 15863748 (-)
CI01000004_15832789_15836192 NA other downstream 183327 15832573 ~ 15836231 (-)
G34633 NA other downstream 231661 15787386 ~ 15787897 (-)
G34718 NA other downstream 737909 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 929200 15086671 ~ 15087575 (-)
G34934 NA other upstream 378622 16401745 ~ 16421506 (-)
G34982 NA other upstream 479602 16502725 ~ 16515974 (-)
G34995 NA other upstream 506319 16529442 ~ 16533008 (-)
G34999 NA other upstream 514072 16537195 ~ 16541278 (-)
CI01000004_16596848_16599652 NA other upstream 555544 16596476 ~ 16601205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location