G33815


Basic Information

Item Value
gene id G33815
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16063415 ~ 16066464 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU38340
TATTATTTGTACATTCAGCACTTACAGGAGTAAACAATAAAATTAAAAGAAAACAAAATGAAGCTTTTATGCTAAAACAATAATAATAAAAAAAAATTTAAAAACCAAATGTGAAAAGGTTAAATATGCATCCCATTCTCCATGGCAGCTTGGCTAAAAACAAAGGGGTTGTAAAAAGCAGACAATAGGTGGGGGGAAAAAAATGATACAAGGAATGTGAGGGAAACAGAAGAGGGAAACGTAAAGTAGTGATCCGGACTTAAGTGACACTAAAGGCTTTCAGAGAATCTCTTTCTGAACGCAGCTTCACTCAGATCGGTGATGACGCTACACGGAAAGAGAAAGAGGACGTCACCAAACCTGGAGAATGCCTTGCAGTCCGACCCACTTACACCAGAAGTCCATTAACACTGAGGAGGGGAAATGAACACCAGGAGTCTTAAAGCCCAGTCAAGAGACACCGAGATGAGTCTACATGGAGACACAGCACCACCGTGGTCCCAATGTGTGTTTGTGTGTGTGCACCCGTGTGTCTTTACGCAGAGTGTGTGTGCATGTGTGTGTTTGAATGAAGTCTGAGTTGGTCCTCAGGAAGGTAGGCATAGAGCTGTTACAGCACATACAGGAACAGGGGTTACAAACTCAACAGTTCCAGACTTCCCTTAGCGTCGTCGATCTCTGGGCGGAGGGCCGCTGCGGCTTCGTGACCTCCTGCTCCCGCTTGCACTGTTTCCGCCAGGCCTGCGATATCCCTCCTTCCGTTTGTCCCCCTCTCGCTCCCTCTCTCGACCTCTGTCTCGGTCTCGTTCTCTGTCGCGGTCTCTCTCACCTTCTCCTCCGGTGGCCCCGCTTGTTTTCATCCTCTCCCTGTGCTCCTCCTCACGTTTCTTATCCTCCTCTTCCATCTCCTTCCACCTCTTCTCTCTTTCCCTCATGCGCTCGGCACGAGCCGCTACCCTCTGTGCTGCCTGCAATGCAAAGTGTTGGGTAATGAGTATCACTGGCATTATATTATAAAATCTGTTTTTTTCCCTTAGCAAATACCACTTTATAAGCAACTAAAATGTGCAAAGTAATATACCTGTTCCTCGGTGAGGGGGAGCCAGTATATGCATGGAGCGGCTTTGGTTTTGCGGAAGAGATCATCCAGCAGTTTAGCGGGTGGCTCCTCAGGTCCTTTTTCCCTTCTTATCAGTTTTTCTCTCTTTGCTCTTCCCTCTTTCCTTGCGCCGCCTCTCGCGATCTCGTGAACGTGATCTTCTGGCGCCAGCTTCCCGCTCTTCTCCAGGTTTGCTGAAGTCTCTCACCTTATCTCTGTCCCATTCCCTTTCTGCACGCGATCTCTCCCTCCTTTCCATTTCCCTCTCTCGTTCTGCCCACTGGTCGCGCTCCGGCAGGAGAGGCGGGGGTACCGGACGGCCAGGTCCAGCGGCTGCCGCCCCACGGGGCTCTTCTGGTGGCTTTTCTCCTGCTGGACCCAAACCCCTGTGGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU38340 True 1494 TUCP 0.50 2 16063415 16066464

Neighbor

gene id symbol gene type direction distance location
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding upstream 18852 16037124 ~ 16044563 (+)
CI01000004_16017111_16024481 SALL2 coding upstream 38633 16016985 ~ 16024782 (+)
CI01000004_16008731_16013012 NA coding upstream 50366 16008615 ~ 16013049 (+)
CI01000004_15947153_15953245 NA coding upstream 109545 15947153 ~ 15953870 (+)
CI01000004_15930478_15944692 NA coding upstream 118671 15930478 ~ 15944744 (+)
CI01000004_16090188_16090874 NA coding downstream 22962 16089426 ~ 16090928 (+)
CI01000004_16117960_16125599 DHRS1 coding downstream 51420 16117884 ~ 16125874 (+)
CI01000004_16138496_16143438 NA coding downstream 72032 16138496 ~ 16144117 (+)
CI01000004_16217935_16218580 NA coding downstream 151389 16217853 ~ 16218580 (+)
CI01000004_16221780_16232426 PSMB5 coding downstream 155316 16221780 ~ 16232940 (+)
G34229 NA non-coding upstream 43926 16019263 ~ 16019489 (+)
G34228 NA non-coding upstream 48309 16014906 ~ 16015106 (+)
G34216 NA non-coding upstream 134665 15928501 ~ 15928750 (+)
G34215 NA non-coding upstream 138919 15923704 ~ 15924496 (+)
G34214 NA non-coding upstream 142529 15920683 ~ 15920886 (+)
G33830 NA non-coding downstream 92248 16158712 ~ 16160998 (+)
G34266 NA non-coding downstream 114044 16180508 ~ 16180849 (+)
G34297 NA non-coding downstream 234769 16301233 ~ 16309306 (+)
G34322 NA non-coding downstream 382382 16448846 ~ 16449090 (+)
G34323 NA non-coding downstream 383216 16449680 ~ 16455626 (+)
G34220 NA other upstream 123465 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 971446 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2026515 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3407704 12646838 ~ 12652570 (+)
G31865 NA other upstream 3868268 12192130 ~ 12197418 (+)
G34400 NA other downstream 910864 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location