G34399


Basic Information

Item Value
gene id G34399
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16950871 ~ 16952619 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU38989
CATTTTTGTTCTTAAGGTCCTGAGTGGAATTATTTTGTGTGTATTCAGTTTGAAAGCAACATCTACTGACTTGTGAAGTTGCTGATTAACTTTCTATAAAACCCTCTTCACAGAGCTTTATCACATACAAATTATTCAATCAATGAATGATAATTGAGAACCTAATGTGCAAGTTTATTTTATTGAGTAAACATATGGAGAATAATCAAAGTTGAATTCTGTGTGTAAAATGTTTATTAACAGTGGGGATATTTAACAAAGGTATGCACATAATAACAAATACAAACTGGATATTATATACAAAAATGAAACTGTGTTGCAAAATGTGCTTATCATGTAATCATAACATTTCATATTGTTCAGTAAAAATATGAAGGACACTGGCCAGTAATGACAATAATTACTGTAAGTCTATTGTAAGAGACGATGAAAGCTAAAAGCACAAATTAAGTTTCTTTAAAAAAGTTTAAATTTTCCAAGCAGTTCATTTTAATAGAACTACCAAATAACATGAAATATGACTCAACAAACATTAAGACTTTAGCCTCATAAGATGATGTTCATTGAAGACCATCAAAGAGAATAAAGTAAATGGCCAACAAATGAAGTGTGGTCATTTACATTATCAAAGACCCATGTATTTTCCCGGAGACGCACATAGACATGATCTCCTTCCTCTAGAGTCAAAGAGATTGAATTAGATCCTGTGTCATAGCGGTCACCTAGAGCATGATTGTAAATTGTTATCATCTGTTGTCCATTTTTAAAGAGTCTTAGACCCATACTTCTAGATGAGCGGTTATGTCCAGTGATAATGAAGAAATAGACACCTTTAACAGGTGCTGTGAAGATACCTGTAATGATATATGCAACAATGAATTAATAAGCATTTTTATGGTCATTTAATTACACTGTTTATCTGCTTTCAGAGTTCCATGACACACAGATTCAGGTTCAGTATAAGAACACACACCAGTGGTTGGGTTGTAAGCTCTTCCTTCATTCACAAACACATCTTGGTAAATCAGAGTGATCTCAGTGTTAAAAGGTCCAAGGTTACCAATGGGTCCAAGTGTGGCGGCAAATGCCACTTTATATTCTTTTTTTCCTGATCTGCTCCTCAGTGACCTCCAGTCTGTTCTTCAGAGATCTCACAGTTGATCTCAGCTCTGCCAGCTCAGAGTAGATCCCTGTGAGAAAGCGTTGCTGAAACTCACCAGAAGTCAAAACAGCACCGCTTTCCTCTTCATTCAAAGGACTCTCAGTCAGTACTCCCTTCTCTTCCTGCTGGACCTCAGACAGACAGGCACAGCTGAACAGGAGAAGCAGCAGCGGATACAGAATGGTGCAGGACATCTTTACCTGAAGAGAATCTATAAGTGGAGAACTGCAGCTGTCAGTGAGGAAATTAATATTATTGGGCTTCGGTTGAAGGTCCCTGCACCAGACACTTAC
>TU38991
CATTTTTGTTCTTAAGGTCCTGAGTGGAATTATTTTGTGTGTATTCAGTTTGAAAGCAACATCTACTGACTTGTGAAGTTGCTGATTAACTTTCTATAAAACCCTCTTCACAGAGCTTTATCACATACAAATTATTCAATCAATGAATGATAATTGAGAACCTAATGTGCAAGTTTATTTTATTGAGTAAACATATGGAGAATAATCAAAGTTGAATTCTGTGTGTAAAATGTTTATTAACAGTGGGGATATTTAACAAAGGTATGCACATAATAACAAATACAAACTGGATATTATATACAAAAATGAAACTGTTCATATTGTTCAGTAAAAATATGAAGGACACTGGCCAGTAATGACAATAATTACTGTAAGTCTATTGTAAGAGACGATGAAAGCTAAAAGCACAAATTAAGTTTCTTTAAAAAAGTTTAAATTTTCCAAGCAGTTCATTTTAATAGAACTACCAAATAACATGAAATATGACTCAACAAACATTAAGACTTTAGCCTCATAAGATGATGTTCATTGAAGACCATCAAAGAGAATAAAGTAAATGGCCAACAAATGAAGTGTGGTCATTTACATTATCAAAGACCCATGTATTTTCCCGGAGACGCACATAGACATGATCTCCTTCCTCTAGAGTCAAAGAGATTGAATTAGATCCTGTGTCATAGCGGTCACCTAGAGCATGATTGTAAATTGTTATCATCTGTTGTCCATTTTTAAAGAGTCTTAGACCCATACTTCTAGATGAGCGGTTATGTCCAGTGATAATGAAGAAATAGACACCTTTAACAGGTGCTGTGAAGATACCTGTAATGATATATGCAACAATGAATTAATAAGCATTTTTATGGTCATTTAATTACACTGTTTATCTGCTTTCAGAGTTCCATGACACACAGATTCAGGTTCAGTATAAGAACACACACCAGTGGTTGGGTTGTAAGCTCTTCCTTCATTCACAAACACATCTTGGTAAATCAGAGTGATCTCAGTGTTAAAAGGTCCAAGGTTACCAATGGGTCCAAGTGTGGCGGCAAATGCCACTTTATATTCTGTGTGAATCAGAGATCACATTTTGTTAAAAAATAATCATGCAAACCTCTGTATAATAACACATCCCAGATCGCAAACTATATTTGCTCTTTGTATTGGTTATGTATATGGCCTGTCTGTTTGAAGATGTTTAGTTGCTGGCTATAGTTAATGATAAATTAATTTATTATTGCTTGGCACTGTTCTGCCATGCTTATGACCAACAAAGATACTCATATAACTTAATTTTTTGTCCATCCAATGATTTTCCATCTGCAAATTTGTCACAAGTGAAACGACAGACGGGAGGGTTACCTTTTTTCCTGATCTGCTCCTCAGTGACCTCCAGTCTGTTCTTCAGAGATCTCACAGTTGATCTCAGCTCTGCCAGCTCAGAGTAGATCCCTGTGAGAAAGCGTTGCTGAAACTCACCAGAAGTCAAAACAGCACCGCTTTCCTCTTCATTCAAAGGACTCTCAGTCAGTACTCCCTTCTCTTCCTGCTGGACCTCAGACAGACAGGCACAGCTGAACAGGAGAAGCAGCAGCGGATACAGAATGGTGCAGGACATCTTTACCTGAAGAGAATCTATAAGTGGAGAACTGCAGCTGTCAGTGAGGAAATTAATATTATTGGGCTTCGGTTGAAGGTCCCTGCACCAGACACTTAC

Function

NR:

description
uncharacterized protein LOC110521475 isoform X1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU38989 False 1455 lncRNA 0.27 2 16950871 16952619
TU38991 True 1714 lncRNA 0.37 2 16950871 16952619

Neighbor

gene id symbol gene type direction distance location
CI01000004_16869205_16944944 CLSTN2 coding upstream 5927 16869205 ~ 16944944 (+)
CI01000004_16812706_16814956 NA coding upstream 135803 16812706 ~ 16815068 (+)
CI01000004_16695941_16729500 NA coding upstream 221152 16695633 ~ 16729719 (+)
CI01000004_16649360_16654303 NA coding upstream 296518 16649171 ~ 16654353 (+)
CI01000004_16579927_16586961 NA coding upstream 363674 16579927 ~ 16587197 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding downstream 110085 17062704 ~ 17110319 (+)
CI01000004_17214619_17236647 PTH1R, PTH1RA coding downstream 262000 17214619 ~ 17236674 (+)
CI01000004_17320843_17323478 NA coding downstream 367873 17320492 ~ 17323777 (+)
CI01000004_17368205_17412619 NA coding downstream 415028 17367647 ~ 17412936 (+)
CI01000004_17419825_17424299 MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B coding downstream 467206 17419825 ~ 17424743 (+)
G34362 NA non-coding upstream 276057 16674505 ~ 16674814 (+)
G34361 NA non-coding upstream 276570 16673921 ~ 16674301 (+)
G34359 NA non-coding upstream 278104 16672544 ~ 16672767 (+)
G34357 NA non-coding upstream 278437 16665580 ~ 16672434 (+)
G34277 NA non-coding upstream 304649 16641342 ~ 16646222 (+)
G34400 NA non-coding downstream 19376 16971995 ~ 17025976 (+)
G34427 NA non-coding downstream 98944 17051563 ~ 17052535 (+)
G34437 NA non-coding downstream 168836 17121455 ~ 17129497 (+)
G35266 NA non-coding downstream 331867 17284486 ~ 17285053 (+)
G35271 NA non-coding downstream 353412 17306031 ~ 17306246 (+)
G33815 NA other upstream 884407 16063415 ~ 16066464 (+)
G34220 NA other upstream 1010921 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1858902 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2913971 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 4295160 12646838 ~ 12652570 (+)

Expression


Co-expression Network