G34400


Basic Information

Item Value
gene id G34400
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16971995 ~ 17025976 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU38992
TGAGTTCAATCCAAACATTATTATATTTGTAGGCCTGATACTGAAAAGCCTGAAGATTTCTGCTGACAGACTCATCTGAGCTTCTTCCTCCTGTTCCGCCTTTAAATAAAACTAAACCATCATTTGTCTGAATACTAAAGCAACATTAATCATTCAATATCACATGTTTCTAACACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACATTAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACTGCTCCTCTCATGATGATTTCACACTATGATATACAGCATCCGTCAGAGGTGTTTGGAGAT
>TU38997
TGAGTTCAATCCAAACATTATTATATTTGTAGGCCTGATACTGAAAAGCCTGAAGATTTCTGCTGACAGACTCATCTGAGCTTCTTCCTCCTGTTCCGCCTTTAAATAAAACTAAACCATCATTTGTCTGAATACTAAAGCAACATTAATCATTCAATATCACATGTTTCTAACACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACACATAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACCGCTCCTCTCATGATGATTTCAGAGATTACTATCTACTCTGTAAGGTGAAACAGAAGACAAAACAATTAGTGTTCAGTGGAACAAAGTGCAAATTAGTTACTATATTTCAATTACTGTTTTTTAAGTAAAAAGAAGATACATTAAATTCCTGTAATCAGATTAATTACTGACTTACATGATCCTGCAGAGATATTTGTGTTTTAAATATAATACATTTAAATCATGAATCATGTTGATCTGTTTGTGTGTTTGTGTTGGTGTGACTCCTATTGAGTGACTGTAAAGAAGAAACTAATGAGTGTACGGCGTATGAATAAACCACAGGGAGCAAATACAAATGATGTTCTGAATTAAAACACAAACCTTTAGTTAAAGCCATTTGTCCTCTAGTTTAAACATGTTTGTAGGGCTCTTAGTAAATAACTGAAAGTAAAGTGAGTGTAAATTAGTGTGACGTGTTGCTTGTCAAAGTAAAAACACACCAGAGACAGAGACATTTCTCATGTGAGGCTGGACGGCTGTGAGCTGAAGCTGAACGCACTGATTTTAGCAGGAGTGCAGCGTTTTCCTACAATCTGACCAAGTCTATTTTCAAACTGAAATGATTCACTACTGACACAGTTAATAAAGCAGGTGTTGTTGTATAAAGCTGTGACAGTGTGCTTTT
>TU39002
TGAGTTCAATCCAAACATTATTATATTTGTAGGCCTGATACTGAAAAGCCTGAAGATTTCTGCTGACAGACTCATCTGAGCTTCTTCCTCCTGTTCCGCCTTTAAATAAAACTAAACCATCATTTGTCTGAATACTAAAGCAACATTAATCATTCAATATCACGTTTCTAATACACATGCTAACACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACATTAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACTGCTCCTCTCATGATGATTTCACACTATGATATACAGCATCCGTCAGAGGTGTTTGGAGAT
>TU38995
GCAGAGATATTTGTGTTTTAAATATAATACATTTAAATCATGAATCATGTTGATCTGTTTGTGTGTTTGTGTTGGTGTGACTCCTATTGAGTGACTGTAAAGAAGAAACTAATGAGTGTACGGCGTATGAATAAACCACAGGGAGCAAATACAAATGATGTTCTGAATTAAAACACAAACCTTTAGTTAAAGCTGTTTGTCCTCTAGTTTAGACATGTTTGTAGGGCTCTTAGTAAATAACTGAAAGTAAAGTGAGTGTAAAGTAGTGTGACGTGTTGCTTGTCAAAGTAAAAACACACTAGAGACAGAGACATTTCTCATGTGAGGCTGGACGGCTGTGAGCTGAAGCTGAACGCACTGATTTTAGCAGGAGTGCAGCGTTTTCCTACAATCTGACCAAATCTATTTTCAAACTGAAATGATTCACTACTGACACAGTTAATGAAGCAGGTGTTGTTGTATAAAGCTGTGACAGTGTGTTTTCACATATCAGAGGTAAATGAAGATCTCTTTAATATCACAGTGATGTTTCCTCACCTCAGGTCACAGTTTGAGTCTCGTAGCACGTGTCTGAGCCGCTGCTTTGAGTCTCCGATCTTATTGAAACTCAGATCAAGATCTTTTAAAAACTGCAGTGCTTTTGAGTTAGTCAAAGACTGAGTTAAAGAAGAAACATCTGTAATGCCACAGTTCAGTAGACTAGAAAGACACAAACAGAGGAAGAGAGATTATCTTAACAAATCATTAATGTGAAGAATTTTGCACAAATATAATGTGAACTCAGACTCATTGTGAGATATTGAGTATAAAGTGTTTTAGTTTAAACTGTTAAAGTGATTTTAAGCATTTTGATTCTTGTATGTGAAGAATGTTACTGACCTCAATCTCTCCAGTTTACAGTGTGAATCCTTCAGTACGTCACATAAGTGCTTCACTCCTGTGTTTCCTAGTTTATTCCAGCTCAGGTTCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATTCTGCATCCACTCAGACTGAAGACAGAGAAAAACAATAGTTCACATCTATGATGATCATCTTCTTGAAGAGCTTCAGCAGCATTTAGTTTCCAATAGTCTGTTTTGAAACCCAGTTACACTAGTTCTGTGTGCTGAAGATACTGTTTCTACTCTTTCATTTTAACTATTTATTTGATGTTTCTATTCTTTATTCTCT
>TU39001
CTCAATCTCTCCAGTTTACAGTGTGAATCCTTCAGTACGTCACATAAGCGCTTCACTCCTGTGTTTCCTACTTTATTCAAGCTCAGGTTCAGCTCTCTCAGGTGTGCCGGGTTTAATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATACTGCATTGTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCCGCTCAGGTCCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATTCTGCATTCTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCAGCTCAGGTTCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGAGCAGAACAACCTTCATCTGTCATATCACAGGAGCTTAAC
>TU39000
CTTAGCTCGCCTTTATTTAAGAAGGAGAATCTCTCTGCATCTGCTCATGTAGCTTCAATAATACAACAGACAAGTGAACTTTTCAAACAAAAACAATGAAAGACACACAAATGCTGTTAACTGGTAAAATGTTTAGTTGGTCTGAATAGAAGAGACTCCATCCACAGAACAAAGACAATATACTGTATATCTGTGCGTTAACAACAGACACATAGATAACTTAATATAAAATAAAACAGAAAAATAAAAAAGATAATGTAAATGCTTGATATATTTATTAGACTATTAGAACATTAGACTTGATATATATATATATATATTTTGATGCATTTATGTGCTATACTTGACAATCACGTTTATGATTAAAAAACATTTTAATGATTATGGATGAGTTCAATCCAACATTATTATATTTGTAGGCCTGATACTGAAGAGCCTGAAGATTTCTGCTGACACTGCTGACTCCTTTAAATAAAACAAAACCATCATTTGTCTGAATATTAAAGCAACATTAATCATTCAATATCACATGTTTCTAATACACATGCTGCTTTATTTCATTGTAAAGTCTGAGTCTCTTCCATCTGTATGAAACACATTTACACATTAATCACACATTTATTTCTCCTCATAGACACAGTAGTGAGACTCTTCTGTGGATCACCTGATGATTACTGCTCCTCTCATGATGATTTCAGAGATTTAAACCATGATGTAAACAATCCACCAGAG
>TU38996
TTGTCAAAGTAAAAACACACCAGAGACAGAGACATTTCTCATGTGAGGCTGGACGGCTGTGAGCTGAAGCTGAACGCACTGATTTTAGCAGGAGTGCAGCGTTTTCCTACAATCTGACCAAGTCTATTTTCAAACTGAAATGATTCACTACTGACACAGTTAATAAAGCAGGTGTTGTTGTATAAAGCTGTGACAGTGTGCTTTTGTTCTCTTTCCTCCTTTGTGTTGAACATTTTAATAACTTCACATTTTGTTCTCACACAAACACTTTGTTGCAATAAAGCTTAATGATAATTTCCTTTCATAAAAATTTAAAAGGTTTGTTCACATAGAGTTAAATGAAGATCTCTTTAATATCACAGTGATGTTTCCTCACCTCAGGTCACAGTTTGAGTCTCGTAGCACGTGTCTGAGCCGCTGCTTTGAGTCTCCGATCTTATTGAAACTCAGATCAAGATCTTTTAAAAACTGCAGTGCTTTTGAGTTAGTCAAAGACTGAGTTAAAGAAGAAACATCTGTAATGCCACAGTTCAGTAGACTAGAAAGACACAAACAGAGGAAGAGAGATTATCTTAACAAATCATTAATGTGAAGAATTTTGCACAAATATAATGTGAACTCAGACTCATTGTGAGATATTGAGTATAAAGTGTTTTAGTTTAAACTGTTAAAGTGATTTTAAGCATTTTGATTCTTGTATGTGAAGAATGTTACTGACCTCAATCTCTCCAGTTTACAGTGTGAATCCTTCAGTACGTCACATAAGTGCTTCACTCCTGTGTTTCCTAGTTTATTCCAGCTCAGGTCCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACCGTTTCTCTGTAATACTGCAAACACTCAGACTGAAGACAGAAAGAGAAAAGACAATGACTCAGATCTATGATGATCAACTAACATGTT
>TU38993
AGTATAATGATACTAACTGTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCCGCTCAGGTCCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATTCTGCATTCTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCCGCTCAGGTTCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGAGCAGAACAACCTTCATCTGTCATATCACAGGAGCTTAAC
>TU38994
AGTATAATGATACTAACTGTAGTTTCTCCAGCTTGAATTGTGGGTTCATCAGTAGATCACTGAGGTTTTTCACTCCAGAGTCTCCTAGTTTATTCCCGCTCAGGTCCAGCTCTCTCAGGTGTGACGGGTTTGATTTCAGAGCTGAAGTCAGGATGACACACTGTTTCTCTGTAATTCTGCATCCACTCAGACTGAAGACAGAGAAAAACAATAGTTCACATCTATGATGATCATCTTCTTGAAGAGCTTCAGCAGCATTTAGTTTCCAATAGTCTGTTTTGAAACCCAGTTACACTAGTTCTGTGTGCTGAAGATACTGTTTCTACTCTTTCATTTTAACTATTTATTTGATGTTTCTATTCTTTATTCTCT

Function

NR:

description
nuclear factor 7, brain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU38992 False 370 lncRNA 0.41 2 16971995 17008000
TU38997 False 978 lncRNA 0.35 2 16971995 17011895
TU39002 False 380 lncRNA 0.44 2 16971995 17008000
TU38995 False 1234 lncRNA 0.37 4 16972489 17015250
TU39001 False 504 TUCP 0.52 4 16977328 17025469
TU39000 False 732 lncRNA 0.38 2 17007253 17011241
TU38996 False 950 lncRNA 0.35 2 17011691 17025976
TU38993 False 356 lncRNA 0.41 4 17012967 17025469
TU38994 True 372 lncRNA 0.38 2 17012967 17015250

Neighbor

gene id symbol gene type direction distance location
CI01000004_16869205_16944944 CLSTN2 coding upstream 27051 16869205 ~ 16944944 (+)
CI01000004_16812706_16814956 NA coding upstream 156927 16812706 ~ 16815068 (+)
CI01000004_16695941_16729500 NA coding upstream 242276 16695633 ~ 16729719 (+)
CI01000004_16649360_16654303 NA coding upstream 317642 16649171 ~ 16654353 (+)
CI01000004_16579927_16586961 NA coding upstream 384798 16579927 ~ 16587197 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding downstream 36728 17062704 ~ 17110319 (+)
CI01000004_17214619_17236647 PTH1R, PTH1RA coding downstream 188643 17214619 ~ 17236674 (+)
CI01000004_17320843_17323478 NA coding downstream 294516 17320492 ~ 17323777 (+)
CI01000004_17368205_17412619 NA coding downstream 341671 17367647 ~ 17412936 (+)
CI01000004_17419825_17424299 MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B coding downstream 393849 17419825 ~ 17424743 (+)
G34391 NA non-coding upstream 15821 16928474 ~ 16956174 (+)
G34399 NA non-coding upstream 19376 16950871 ~ 16952619 (+)
G34362 NA non-coding upstream 297181 16674505 ~ 16674814 (+)
G34361 NA non-coding upstream 297694 16673921 ~ 16674301 (+)
G34359 NA non-coding upstream 299228 16672544 ~ 16672767 (+)
G34427 NA non-coding downstream 25587 17051563 ~ 17052535 (+)
G34437 NA non-coding downstream 95479 17121455 ~ 17129497 (+)
G35266 NA non-coding downstream 258510 17284486 ~ 17285053 (+)
G35271 NA non-coding downstream 280055 17306031 ~ 17306246 (+)
G35272 NA non-coding downstream 285511 17311487 ~ 17311827 (+)
G33815 NA other upstream 905531 16063415 ~ 16066464 (+)
G34220 NA other upstream 1032045 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1880026 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2935095 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 4316284 12646838 ~ 12652570 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location