Gene
RNA
| Item | Value |
|---|---|
| gene id | G34427 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 17051563 ~ 17052535 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU39031 | False | 973 | lncRNA | 0.35 | 1 | 17051563 | 17052535 |
| TU39033 | True | 381 | lncRNA | 0.36 | 1 | 17051563 | 17051943 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_16869205_16944944 | CLSTN2 | coding | upstream | 106619 | 16869205 ~ 16944944 (+) |
| CI01000004_16812706_16814956 | NA | coding | upstream | 236495 | 16812706 ~ 16815068 (+) |
| CI01000004_16695941_16729500 | NA | coding | upstream | 321844 | 16695633 ~ 16729719 (+) |
| CI01000004_16649360_16654303 | NA | coding | upstream | 397210 | 16649171 ~ 16654353 (+) |
| CI01000004_16579927_16586961 | NA | coding | upstream | 464366 | 16579927 ~ 16587197 (+) |
| CI01000004_17062704_17110319 | CRHR2.S, CRHR2 | coding | downstream | 10169 | 17062704 ~ 17110319 (+) |
| CI01000004_17214619_17236647 | PTH1R, PTH1RA | coding | downstream | 162084 | 17214619 ~ 17236674 (+) |
| CI01000004_17320843_17323478 | NA | coding | downstream | 267957 | 17320492 ~ 17323777 (+) |
| CI01000004_17368205_17412619 | NA | coding | downstream | 315112 | 17367647 ~ 17412936 (+) |
| CI01000004_17419825_17424299 | MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B | coding | downstream | 367290 | 17419825 ~ 17424743 (+) |
| G34400 | NA | non-coding | upstream | 25587 | 16971995 ~ 17025976 (+) |
| G34391 | NA | non-coding | upstream | 95389 | 16928474 ~ 16956174 (+) |
| G34399 | NA | non-coding | upstream | 98944 | 16950871 ~ 16952619 (+) |
| G34362 | NA | non-coding | upstream | 376749 | 16674505 ~ 16674814 (+) |
| G34361 | NA | non-coding | upstream | 377262 | 16673921 ~ 16674301 (+) |
| G34437 | NA | non-coding | downstream | 68920 | 17121455 ~ 17129497 (+) |
| G35266 | NA | non-coding | downstream | 231951 | 17284486 ~ 17285053 (+) |
| G35271 | NA | non-coding | downstream | 253496 | 17306031 ~ 17306246 (+) |
| G35272 | NA | non-coding | downstream | 258952 | 17311487 ~ 17311827 (+) |
| G35183 | NA | non-coding | downstream | 260484 | 17313019 ~ 17314281 (+) |
| G33815 | NA | other | upstream | 985099 | 16063415 ~ 16066464 (+) |
| G34220 | NA | other | upstream | 1111613 | 15939357 ~ 15939950 (+) |
| CI01000004_15091390_15096502 | GA45B, GADD45B, GADD45BB | other | upstream | 1959594 | 15091200 ~ 15097173 (+) |
| CI01000004_14036114_14036449 | KIAA0040 | other | upstream | 3014663 | 14035393 ~ 14039142 (+) |
