XLOC_000709 (TNPO2)


Basic Information

Item Value
gene id XLOC_000709
gene name TNPO2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54137089 ~ 54146461 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001185
atgtgtgtatgtatatcagGCTGTATGCAGGGGATGGTGCCGTACCTGCCCGAGCTCATCCCGCACCTCATCCAGTGTCTGTGTGATAAGAAGGCTCTGGTTCGCTCCATCGCCTGCTGGACGCTCAGCCGCTATGCACACTGGGTAGTAAGCCAGCCGCCGGACGCCCACCTCAAACCGCTCATGACTGAACTGCTCAAACGCATCCTGGACGGCAACAAGAGGGTGCAGGAGGCCGCTTGCAGTGCGTTTGCGACTCTGGAGGAGGAGGCGTGCACAGAGCTGGTCCCGTATCTCAGCTACATTTTAGACACGCTGGTGTTTGCGTTCGGGAAATATCAGCACAAGAACCTGCTCATCCTCTACGATGCCATCGGCACCCTGGCGGACTCTGTGGGACATCATCTCAACCAGCCGgAATACATCCAGAAACTGATGCCGCCTCTGATCCAGAAGTGGAATGAACTGAAGGATGAGGATAAAGACCTGTTTCCCCTACTGGAGtgtttgtCGTCTGTGGCCACAGCGTTACAGAGTGGTTTCCTCCCATACTGTGAGCCCGTCTATCAGCGCTGTGTGACTCTGGTGCAGAAAACACTCGCACAAGCCATGatgtacAGCCAGCAGCCGGATCAGTACGAGGCTCCAGATAAGGACTTCATGATCGTGGCTCTGGATCTGCTCAGTGGTCTGGCCGAGGGTCTCGGGGGTCATGTGGACCAGCTGGTTGCTCGTAGCAATATCATGACCCTTCTGTTCCAGTgtatgcagGACACGATGCCTGAAGTGAGGCAGAGCTCGTTTGCATTGCTGGGGGATTTGACCAAGGCCTGTTTTCCACATGTTAAACCTTGCATTGCTGAGTTCATGCCGATTCTGGGGACGAATCTGAACCCGGAATTCATCTCGGTGTGTAATAACGCCACCTGGGCCATCGGAGAGATCTGCATGCAGATGGGTGTGGAGATGCAGCCGTATGTGGCTCTGGTTCTTCCTCATCTTGTGGAGATCATTAACAGACCCAACACTCCTAAAACCCTGCTGGAGAACACGGccaTCACGATTGGTCGCCTGGGTTATGTGTGTCCACAAGAAGTGGCGCCCATGTTGCAACAGTTCATCAGACCCTGGTGCACATCGTTACGAAACATCCGAGACAATGAAGAAAAGGACTCTGCCTTCAGAGGCATCTGTGTGATGATCGGTGTGAATCCCGGCGGTGTGGTCCAGgatttcatcttcTTCTGTGATGCCGTGGCCTCCTGGGTCAATCCTAAAGATGACCTGAGGGACATGTTCTACAAGATCCTCCACGGTTTTAAGGATCAGGTTGGCGAGGAGAACTGGCAGCAGTTCTCGGAGCAGTTTCCACCCATCCTGAAGGAACGCCTCTCTGCATGCTATGGCGTGTAG

Function

symbol description
tnpo2 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Orthologous to human TNPO2 (transportin 2).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040822-16 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in cytoplasm and nucleus. Orthologous to human TNPO2 (transportin 2).

Ensembl:

ensembl_id ENSDARG00000042887

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001185 True 1413 mRNA 0.54 12 54137089 54146461

Neighbor

gene id symbol gene type direction distance location
XLOC_000708 LO017722.1 coding upstream 10661 54124209 ~ 54126428 (+)
XLOC_000707 rln3b coding upstream 19037 54115839 ~ 54118052 (+)
XLOC_000706 dcaf15 coding upstream 52424 54069450 ~ 54084665 (+)
XLOC_000705 triobpa coding upstream 74977 54037077 ~ 54062112 (+)
XLOC_000704 dla coding upstream 110737 54013457 ~ 54026352 (+)
XLOC_000710 CABZ01067150.1 coding downstream 39578 54186039 ~ 54186156 (+)
XLOC_000711 CABZ01067150.2 coding downstream 48340 54194801 ~ 54274861 (+)
XLOC_000712 NA coding downstream 130782 54277243 ~ 54469289 (+)
XLOC_000713 NA coding downstream 255472 54401933 ~ 54404147 (+)
XLOC_000714 si:ch211-202h22.10 coding downstream 459893 54606354 ~ 54608032 (+)
XLOC_000703 NA non-coding upstream 148313 53982614 ~ 53988776 (+)
XLOC_000699 NA non-coding upstream 271252 53864528 ~ 53865837 (+)
XLOC_000697 NA non-coding upstream 366350 53760797 ~ 53770739 (+)
XLOC_000695 NA non-coding upstream 441534 53688977 ~ 53695555 (+)
XLOC_000694 NA non-coding upstream 478800 53656231 ~ 53658289 (+)
XLOC_000715 NA non-coding downstream 465377 54611838 ~ 54613479 (+)
XLOC_000721 NA non-coding downstream 551712 54698173 ~ 54700755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000302_01197501_01201810 TNPO2 coding CI01000302 null 1197501 ~ 1201875 (+)
bowfin (Amia calva) AMCG00008400 tnpo2,LOC108443332,LOC108258583 coding CM030126.1 CM030126.1 550302 ~ 566102 (-)