G34437


Basic Information

Item Value
gene id G34437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 17121455 ~ 17129497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU39045
TGCTTTTTGTGTAGTTTATTATACTTATTTTACAGAATGAAGTTTATTTCGTGGCTTAAATAAATCACATGTTACTCAGAACCTGACATGTTTGTCTTGTCAAATATGTTACATTCAGCTGTCGCTAATTCATTGACTTTTGAAAATCAGGTTCTTTTTTTTCTACCAGGAAAGGAGTGGTTTTGATGAACAAAGTTGTAGACAATTTATTGTCTCAATACAACCAAATCTTATCTTCTAGTTTACAATCTAATGAACAGACATGTGCCGCCTCAGAGCTGATCGTAATGAAACATATCAAAACAACTCGTTTCATTAACTCTTCCTCATCACAGCTCTAAATGCAGACATTCCAATACAAACGATCATGTTTTCTAGGAATAGTGAAATGAAAAGGATTCAGAGAGAGAGGGGGGAGGCTGTTTAAACCAAGCGTGACATTTAATAAACTTGATTGTATTCACAAAAAGAACAGGTGTGATGCATGATTGAGTCATTTTGGCTCAACAGACTGAAGCCATACAAAAAGGAACATTTGAGAGACAGCTGGAGACAGTGAGGACAGTGGACCCACAGCAGAAAACACCTGCACGGGTTTTCATTTACAAAAGAACAACGATGAAATAACATTGGCATTATTTTGTATCCTTAATTGATGTTTTGTTGATCATCTGTTCAGCCGGCCATGATATGCTTTACAAAAGCTTCATAGTTTATACAGCCGTTTGCATCCTCCTGCCCAGCCATCAGCTGCTCGACCTCATCTTCCTTCATCTTTTCACCCAGAGTAGCGAGGACGTGTCTGAGCTCAGCACCCATCACTGTTCCATTCCCCTCTTTGTCAAACACTCTCAGGCCCTCAACGAAGTCCTCAAAGGTGCCACGGTCTTTGGCCTTGCAGATGTGTTGATGCATGGGCAGGAACTGGTCAAAGTCCAGCATCTTCACTTGCATATCTTCAGCTTTGGGTTTGCCTAAGACGTGCAGAACTTCAGCGTTGGTGGGGTTCTGACCCAAGGCCCTGATCAGGTCACCACACTGAGCGAAGGTGATTTTCATCTCGTTGGTTGGCGTCCTGTCAAACAGCTGGAACGCATCCTTAAAATCCTCAATCTGCTCAGCGGTGAATTCAATCTGAACTTCGGCTGGGTTAAACTCCGGCTCCTTGGGGGGCTCGGGCTCTGGGGGTTTGGGTGCAGCTACTGGTTTGGGCTCTTCCTTCTTCTTGGGGGCCATGCTGGTGGTTACGATGCAACACAGAGGGACAGAGACGGCACAGGGTCAGACACA
>TU39047
TGCTTTTTGTGTAGTTTATTATACTTATTTTACAGAATGAAGTTTATTTCGTGGCTTAAATAAATCACATGTTACTCAGAACCTGACATGTTTGTCTTGTCAAATATGTTACATTCAGCTGTCGCTAATTCATTGACTTTTGAAAATCAGGTTCTTTTTTTTCTACCAGGAAAGGAGTGGTTTTGATGAACAAAGTTGTAGACAATTTATTGTCTCAATACAACCAAATCTTATCTTCTAGTTTACAATCTAATGAACAGACATGTGCCGCCTCAGAGCTGATCGTAATGAAACATATCAAAACAACTCGTTTCATTAACTCTTCCTCATCACAGCTCTAAATGCAGACATTCCAATACAAACGATCATGTTTTCTAGGAATAGTGAAATGAAAAGGATTCAGAGAGAGAGGGGGGAGGCTGTTTAAACCAAGCGTGACATTTAATAAACTTGATTGTATTCACAAAAAGAACAGGTGTGATGCATGATTGAGTCATTTTGGCTCAACAGACTGAAGCCATACAAAAAGGAACATTTGAGAGACAGCTGGAGACAGTGAGGACAGTGGACCCACAGCAGAAAACACCTGCACGGGTTTTCATTTACAAAAGAACAACGATGAAATAACATTGGCATTATTTTGTATCCTTAATTGATGTTTTGTTGATCATCTGAAAAATAGGAAGAAAAAAAATCAACATTTATACTCAGTGCACATGCAGGTGCTTTACAGAGTGAAATGATTTGTTTTAAACACTTAGTGATGAATAAAAAACACTAAAATATAACAAAAATGCATTCAAGACAAAGTTTAAATGGGTTGATTTCTCATACCTGTTCAGCCGGCCATGATATGCTTTACAAAAGCTGTGGGGGGAAAGAAAAACATAAATTAATATTCTGTGCTAATGCATGTTTACTCTATACTATTATGAGCGCAGTGTTGCTGTTTTTATTTTTTGTTTTAGACAGTCATGTGGGTAAAGTTTTGTCACAGAAAATATTGTACTAGATGGGTCAACATTGCCATCTAGAGGAGAAGAGAACAATCATATTTTGATCAAAAATAGAAATATTTTTGTTCTCATTATCACTTATACTACATACACAGACATAAACTGTGATGTTATCAGTCTGTTGATAACAGATGTTGATGTATTGGTGGACATGCTGACACTGAATCAAAGAGCTGAACAGCAGATGATGGAGTTGTAAAAGTGTGTAGAAGCTCACCTTCATAGTTTATACAGCCGTTTGCATCCTCCTGCCCAGCCATCAGCTGCTCGACCTCATCTTCCTTCATCTTTTCACCAGAGTAGCGAGGACGTGTCTGAGCTCAGCACCCATCACTGTTCCATTCCCCTCTTTGTCAAACACTCTCAGGCCCTCAACGAAGTCCTCAAAGGTGCCACGGTCTTTGGCCTTGCAGATGTGTTGATGCATGGGCAGGAACTGGTCAAAGTCCAGCATCTTCACTTGCATCTTCAGCTTTGGGTTTGCCTAAGACGTGCAGAACTTCAGCGTTGGTGGGGTTCTGACCCAAGGCCCTGATCAGGTCACCACACTGAGCGAAGGTGATTTTCATCTCGTTGGTTGGCGTCCTGTCAAACAGCTGGAACGCATCCTTAAACCCTCAATCTGCTCAGCGGTGAATTCAATCTGCCAAGAAAACAAAAATCAAACATTAAATAATCATACAAAACTCTGAAGCTTAATAAATAACACACAAGGTTATAATTGGATTAGATGCGGTAGATGTGATTATTAATGCTTGGGTGGTATTTGTCCTTTATCACAGCTGTCAGATGTCTCTGGTTACTCAAGCTCAACCCCGTTTGTCCTGTGACTCATTGTCCAAAAGAATTTATGGGCAACCTTGGGCGTGTGTGTTCACCCGATACCCCTTTTGTCATCTCAGCACAAACTGTTACACGACATGGTTAGACAGTGATTGAAGAGACAAGATGCTTTTTATGGCCTTAGTAAATGGAAAAATGCCAAAAGATGAGCCCTACTGAGGGAACCGTTAGGATAGGATATTACCACCTAACAATGCAACTACAAATACAAACGCATGAGAGTTGTAACTTTGCATTTTGTCCTGCCAAAGATAATTGAACAGATTTACATCTCGAAACTATTATTGATGCTTCACTGCCATTAAGTGCCATTGTATCTGATTTATAAATTGCATTAAAGCATATTACCCATTGAGGCACAACCAACAACGAAAACAATGCCACTGGATGCAGGAAATTATAGAGGTGCAGTAAATGATTGTTCTCAGGAATCAGAGCTTCTAGTGTTCTAGTCGATTGACATGCTTGCTTTATGTTCTCAACAAAAGCTGTAGATGGATTGGAAATTGCTTCAGAGTTTGGGTGGTCCATTCTGGGGTAACATAATCAAAATCACATTGTGTGGCCCAAACCTCAATGGTTTGGAGCATATATTATGGCTTCTCTTAACCCCAAATTTTCAGACTATGGAAATGTGGTGGCAATGTTGACCACTAAAATCTCTTTTGTTGCCATACTCTCAACTTTCCACCATTTCACTAGCAAAAGCTAAATATTACTTGACCTGCACAGAAAGTGATATGCTGATGATCTGTTTGAGTCTAGTGTATTTATATATCTTGTGCGAGTTTCTAAAACACTCGGATGTGGGAAAGAAGTTCTCTAACGGTAACAAAACAAACTCTGACAATTGTTTAGTTCAGTGCAAATGTCTTCTCAAATCAGTTCTGAGCTCCGCAGATTAAACAAATATGTACACAACACACCGCCACACGCAGCTGATCGGCAGACGGTGGGAGATATCATTTGGCATTCACAGCCATTATTCAACAGCAGGTTGTCTTTTTGGACGCTCTACACCCTGTTGCTTAAAATAGCGCATGGACAATAAAGAAACCAGTGGTTATCTTTGTGAGAAGGCAATATTTGTCCTCAGGAAGTCCTCCCTAATCTAGAATGAGTAAAACTCATGATGCATCAAGAGAAAGCGCCTTAAAGTCTTTGGCAGCAGGAATGATGGTATAATTAGGCTATTATTTTCACTTCATCCTTCACCATAAATAATAGGGTAACAGAAGAATAATATGACTTGTTGCTCAGTGCAAACCAAACAAACACAGCCCTTAGTCAGACTAGAAACCACATTCAGTTTGATAGAAATGAAAATACAAATCCGTTCAATAAAAACCCATCTCTTGCAGTGGATCTCAACGACTGGTACCTGAACTTCGGCTGGGTTAAACTCCGGCTCCTTGGGGGGCTCGGGCTCTGGGGGTTTGGGTGCAGCTACTGGTTTGGGCTCTTCCTTCTTCTTGGGGGCCATGCTGGTGGTTACGATGCAACACAGAGGGACAGAGACGGCACAGGGTCAGACACACTCTGGGTACAGGACTCCATGCTGCGAGACGACACTTTATCCTCAGACTAGCAGGAGAGACAGGAATCACTGGGAGAGGCGAGAGAGGAAGAGGAGCAGGAAGGATCTTCAGCTGTGTCATATGTCAGAGCTCCGCCCACATACAGTAACTGCTCCAACAGGCTTCTCCTTCAAACCTCAGGATTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU39045 False 1290 lncRNA 0.33 7 17121455 17127389
TU39047 True 3583 lncRNA 0.40 5 17121455 17129497

Neighbor

gene id symbol gene type direction distance location
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding upstream 11136 17062704 ~ 17110319 (+)
CI01000004_16869205_16944944 CLSTN2 coding upstream 176511 16869205 ~ 16944944 (+)
CI01000004_16812706_16814956 NA coding upstream 306387 16812706 ~ 16815068 (+)
CI01000004_16695941_16729500 NA coding upstream 391736 16695633 ~ 16729719 (+)
CI01000004_16649360_16654303 NA coding upstream 467102 16649171 ~ 16654353 (+)
CI01000004_17214619_17236647 PTH1R, PTH1RA coding downstream 85122 17214619 ~ 17236674 (+)
CI01000004_17320843_17323478 NA coding downstream 190995 17320492 ~ 17323777 (+)
CI01000004_17368205_17412619 NA coding downstream 238150 17367647 ~ 17412936 (+)
CI01000004_17419825_17424299 MGC53997, TBB2A, TUBB2B.L, TUBB2, TUBB2A, TUBB2B coding downstream 290328 17419825 ~ 17424743 (+)
G34427 NA non-coding upstream 68920 17051563 ~ 17052535 (+)
G34400 NA non-coding upstream 95479 16971995 ~ 17025976 (+)
G34391 NA non-coding upstream 165281 16928474 ~ 16956174 (+)
G34399 NA non-coding upstream 168836 16950871 ~ 16952619 (+)
G34362 NA non-coding upstream 446641 16674505 ~ 16674814 (+)
G35266 NA non-coding downstream 154989 17284486 ~ 17285053 (+)
G35271 NA non-coding downstream 176534 17306031 ~ 17306246 (+)
G35272 NA non-coding downstream 181990 17311487 ~ 17311827 (+)
G35183 NA non-coding downstream 183522 17313019 ~ 17314281 (+)
G35191 NA non-coding downstream 185372 17314869 ~ 17315864 (+)
G33815 NA other upstream 1054991 16063415 ~ 16066464 (+)
G34220 NA other upstream 1181505 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 2029486 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 3084555 14035393 ~ 14039142 (+)

Expression


Co-expression Network