XLOC_000071 (hecw2b)


Basic Information

Item Value
gene id XLOC_000071
gene name hecw2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6357059 ~ 6366066 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000143
CCCGTGTGATCTGAGTGATCTGGAGTATCTGGATGAGGAGTTTCATCAGAGTCTTCAGTGGATGAAGGACAATGACATAGAAGATATGCTGGATCTGACCTTCACAGTCAATGAGGAGGTGTTCGGACAGaTCACAGAGCGCGAGCTGAAGCCTGGCGGTGCAAACATCCCAGTGTCGGAGAAGAATAAGAAGGAGTACATCGAACGCATGGTGAAGTGGCGTATCGAGCGCGGCGTCGTCCAGCAGACCGAGAGTCTCGTACGGGGCTTTTATGAGGTTGTAGATGCGCGGCTGGTGTCTGTGTTTGATGCACGAGAGCTGGAGCTGGTGATCGCTGGGACAGCAGAGATTGATCTGGGAGACTGGAGGAACAACACTGAATACAGAGGAGGTTATCATGATAACCACATCGTGATCCGCTGGTTCTGGGCGGCAGTGGAGCGATTCAACAATGAGCAGAGACTCCGGTTACTCCAGTTTGTGACCGGGACGTCCAGTATCCCGTATGAGGGCTTTGCCTCGCTCAGGGGCAGCAATGGGCCgcggcgcttctgtgtggagaaATGGGGGAAAATCACATCTCTGCCCAGGGCTCACACGTGTTTCAACCGGCTGGATCTTCCCCCCTATCCTTCATTCTCCATGCTCTACGAGAAGATGCTGACGGCAGTGGAGGAGACCAGCACTTTCGGTTTGGAGTGAATGTCGGTCAGATTtcagaaacatttaaacaaacaccAGAAGCACTTAGacgtacatatatattttatacaccgCATCACTTAAAAAACACTGAAAGCAAGGGTGTTTCTCTGACTCAGATGTGATTTATTCCCTTCTTCTTGTCAGTAACGCCATATTGATTGGCTCTGGATTCGACAGcgatttttttttgggggggggggggggcatttgAAAGTTTCATCACTTCCAAATCGAAAGTGATGATAATGAGAAACAAACCCAAAGGACTTTGATACTCTCGCACTCTTTTTATCTGTAAAGAGACTTTTTATACAGCGCATCGAAACGCAGCGTGAATGAACAGATGTTGTGTTTGTTGTGAGCTATTTCAAATCGCCTCAATCTCACACCACACACCGTATGTATTGACtccaaatgtatatgttttccGTTCATATTTATGCATTAGTCCGTCACGTATGTTTGTTTCAACGACGTATGCCGTCACTTCTGACACTTTTGAATGAATTTATTTGGTGTATCGTCTCACATGCAACGCTGTTTTGCTTTGAAAGGGCATGTTACACTGCAGATGCACTACAATATCATGAATGTGAGGAGCACTTTGTGCAGTGATGAAATGACCAGAGGTTTTGTTTCGTTGT

Function

symbol description
hecw2b Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECW2 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2).

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101001-3 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HECW2 (HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2).

Ensembl:

ensembl_id ENSDARG00000063253

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000143 True 1350 mRNA 0.47 6 6357059 6366066

Neighbor

gene id symbol gene type direction distance location
XLOC_000070 LO018629.1 coding upstream 27767 6307305 ~ 6329292 (+)
XLOC_000069 fastkd2 coding upstream 84913 6225493 ~ 6272146 (+)
XLOC_000068 retreg2 coding upstream 146341 6189949 ~ 6210718 (+)
XLOC_000067 cnppd1 coding upstream 171527 6161930 ~ 6185532 (+)
XLOC_000066 abcb6a coding upstream 198450 6135176 ~ 6158609 (+)
XLOC_000072 NA coding downstream 13812 6379878 ~ 6554470 (+)
XLOC_000073 NA coding downstream 32144 6398210 ~ 6403223 (+)
XLOC_000074 si:ch211-93g23.2 coding downstream 274371 6640437 ~ 6646356 (+)
XLOC_000075 ube2f coding downstream 280463 6646529 ~ 6664123 (+)
XLOC_000076 NA coding downstream 298967 6665033 ~ 6668339 (+)
XLOC_000065 NA non-coding upstream 557967 5795013 ~ 5799092 (+)
XLOC_000064 NA non-coding upstream 628375 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 1043464 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1326904 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1676582 4598060 ~ 4680477 (+)
XLOC_000077 NA non-coding downstream 393117 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 421624 6787690 ~ 6787804 (+)

Expression


Co-expression Network