XLOC_000713


Basic Information

Item Value
gene id XLOC_000713
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54401933 ~ 54404147 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003178
tgtttgtgtacatattAAGTGTGTGTAATAATTTAAGCGAGTGTGAgtataataaagtaatttaaaaaaagctgaatgtgtgtgtttgtgtacatattGAGTCAGTTTGTGTTAAATTAGATGAGTGAGtgtataaaaactaaaacaaagagctgaatgtgtgtgtttgtgtacatattGGATCGGTGTGTGTTCATTTAAGTGAGTGTGagtataaaaaagtaattaaaaagagctgaatgtgtgtgtgtttctgtaaatactgagtgtgtgtgtgttcaataaaGTGTGTgagtataaaaaattataatgaaagagcttaaatgtgtgtgtttgtgtgtaaatattgAGTTTGTGTGTTCATTTAAGTGTGAGTATGAAAAAAAgagcttaaaatgtgtgtgtttgtgtaaatattgGGTCTGTGTGTTCATTTGagtgagtaaaaaaaataataaaaagagaaaaaatgtgtgtgtttgtgtacatactGAGTTTgtaggttgtgtgtgtgtttaagcgaGTGTGAgtataaaaaaagtgaaaagtactcaaaaaaaaagctgaaatgtgtgtgtttgtgtacatattGATTTTCATTTAAGTGAGTGTgggttaaaaaatttaaaaagagctcaaatatgtgtgtgtgtttgtgtatggagTCTGTGTGCGTGTTCATTTAAGCAAGAATgagtataaaaaagtaaaaagtacaaaacaaagagctgaatgtgtgtgtttgtgtacatattGAGTCAGTTTGTGTTAAATTAGATGAGTGAGtgtataaaaactaaaacaaagagctaaatgtgtgtgtttgtgtacatattGGATCGGTGTGTGTTCATTTAAGTGAGTGTGagtataaaaaagtaattaaaaagagctgaatgtgtgtgtgtttctgtaaatactgagtgtgtgtgtgtgtgtgtgtgtgtgttcaataaaGTGTGtgagtataaaaaataataatgaaagagcttaaatgtgtgtgtttgtgtgtaaatattgAGTTTGTGTGTTCATTTAAGTGTGAGTATGAAAAAAAgagcttaaaatgtgtgtgtttgtgtaaatattAGGTCTGTGTGTTCATTTGagtgagtaaaaaaaataataaaaagagaaaaaatgtgtgtgtttgtgtacatactGAGTTTgtaggttgtgtgtgtgtttaagcgaGTGTGagtataaaaaagtgaaaagtactcaaaaaaaaaagctgaaatgtgtgtgtttgtgtacatattGAGTGtctgtttgttcattttagtaagTGTGAGTAAACTAGAAAAACT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003178 True 1310 lncRNA 0.30 2 54401933 54404147

Neighbor

gene id symbol gene type direction distance location
XLOC_000711 CABZ01067150.2 coding upstream 127072 54194801 ~ 54274861 (+)
XLOC_000710 CABZ01067150.1 coding upstream 215777 54186039 ~ 54186156 (+)
XLOC_000709 TNPO2 coding upstream 255472 54137089 ~ 54146461 (+)
XLOC_000708 LO017722.1 coding upstream 275505 54124209 ~ 54126428 (+)
XLOC_000707 rln3b coding upstream 283881 54115839 ~ 54118052 (+)
XLOC_000714 si:ch211-202h22.10 coding downstream 202207 54606354 ~ 54608032 (+)
XLOC_000715 NA coding downstream 207691 54611838 ~ 54613479 (+)
XLOC_000716 si:ch211-202h22.9 coding downstream 222344 54626491 ~ 54637378 (+)
XLOC_000717 si:ch211-202h22.8 coding downstream 233979 54638126 ~ 54648766 (+)
XLOC_000718 si:ch211-202h22.7 coding downstream 245901 54650048 ~ 54659923 (+)
XLOC_000703 NA non-coding upstream 413157 53982614 ~ 53988776 (+)
XLOC_000699 NA non-coding upstream 536096 53864528 ~ 53865837 (+)
XLOC_000697 NA non-coding upstream 631194 53760797 ~ 53770739 (+)
XLOC_000695 NA non-coding upstream 706378 53688977 ~ 53695555 (+)
XLOC_000721 NA non-coding downstream 294026 54698173 ~ 54700755 (+)
XLOC_000729 NA non-coding downstream 555345 54959492 ~ 54985297 (+)
XLOC_000733 CU467849.1 non-coding downstream 724318 55128465 ~ 55128579 (+)
XLOC_000735 NA non-coding downstream 780617 55184764 ~ 55191262 (+)

Expression


Co-expression Network